bfast - Blat-like Fast Accurate Search Tool

Property Value
Distribution Fedora 25
Repository Fedora i386
Package name bfast
Package version 0.7.0a
Package release 14.fc24
Package architecture i686
Package type rpm
Installed size 2.70 MB
Download size 746.77 KB
Official Mirror
BFAST facilitates the fast and accurate mapping of short reads to
reference sequences.  Some advantages of BFAST include:
Speed: enables billions of short reads to be mapped quickly.
Accuracy: A priori probabilities for mapping reads with defined set of variants.
An easy way to measurably tune accuracy at the expense of speed.
Specifically, BFAST was designed to facilitate whole-genome
resequencing, where mapping billions of short reads with variants is
of utmost importance.
BFAST supports both Illumina and ABI SOLiD data, as well as any other
Next-Generation Sequencing Technology (454, Helicos), with particular
emphasis on sensitivity towards errors, SNPs and especially
indels. Other algorithms take short-cuts by ignoring errors, certain
types of variants (indels), and even require further alignment, all to
be the "fastest" (but still not complete). BFAST is able to be tuned
to find variants regardless of the error-rate, polymorphism rate, or
other factors.


Package Version Architecture Repository
bfast-0.7.0a-14.fc24.x86_64.rpm 0.7.0a x86_64 Fedora
bfast - - -


Name Value
/usr/bin/perl - - - - - - - - - -
perl(Cwd) -
perl(Data::Dumper) -
perl(File::Path) -
perl(Getopt::Long) -
perl(Getopt::Std) -
perl(Pod::Usage) -
perl(XML::Simple) -
perl(constant) -
perl(strict) -
perl(warnings) -
rtld(GNU_HASH) -


Name Value
bfast = 0.7.0a-14.fc24
bfast(x86-32) = 0.7.0a-14.fc24


Type URL
Binary Package bfast-0.7.0a-14.fc24.i686.rpm
Source Package bfast-0.7.0a-14.fc24.src.rpm

Install Howto

Install the bfast rpm package:

# dnf install bfast




2016-02-19 - Ralf Cors├ępius <> - 0.7.0a-14
- Let configure honor CFLAGS (F24FTBFS, RHBZ#1307345).
- Append -fgnu89-inline to CFLAGS.
- Re-enable hardening.
- Add %license.
- Modernize spec.
2016-02-03 - Fedora Release Engineering <> - 0.7.0a-13
- Rebuilt for
2015-07-05 - Adam Huffman <> - 0.7.0a-12
- Disable hardened build temporarily to work around configure problem
2015-06-17 - Fedora Release Engineering <> - 0.7.0a-11
- Rebuilt for
2014-08-15 - Fedora Release Engineering <> - 0.7.0a-10
- Rebuilt for
2014-06-07 - Adam Huffman <> - 0.7.0a-9
- More aarch64 build fixes
- Update pthread patch
2014-06-07 - Fedora Release Engineering <> - 0.7.0a-8
- Rebuilt for
2014-06-02 - Adam Huffman <> - 0.7.0a-7
- Fix for building on aarch64
2013-08-03 - Fedora Release Engineering <> - 0.7.0a-6
- Rebuilt for
2013-07-17 - Petr Pisar <> - 0.7.0a-5
- Perl 5.18 rebuild

See Also

Package Description
bharati-m17n-1.2-8.fc24.noarch.rpm Bharati input method based on InScript layout
bib2html-1.2.1-15.fc24.i686.rpm Converting bibTeX file to HTML
biber-2.1-5.fc25.noarch.rpm Command-line bibliographic manager, BibTeX replacement
biblesync-1.1.2-5.fc24.i686.rpm A Cross-platform library for sharing Bible navigation
biblesync-devel-1.1.2-5.fc24.i686.rpm Development files for biblesync
bibletime-2.10.1-13.fc24.i686.rpm An easy to use Bible study tool
bibtex2html-1.97-9.fc24.i686.rpm Collection of tools for translating from BibTeX to HTML
bibus-1.5.1-15.fc24.i686.rpm Bibliographic and reference management software
bibutils-5.5-3.fc24.i686.rpm Bibliography conversion tools
bibutils-devel-5.5-3.fc24.i686.rpm Development files for bibutils
bibutils-libs-5.5-3.fc24.i686.rpm Bibutils library
bicon-0.5-2.fc24.i686.rpm Bidirectional Console
bicon-devel-0.5-2.fc24.i686.rpm Development Libraries for BiCon
bicon-fonts-0.5-2.fc24.noarch.rpm Font Files for BiCon
bicon-keymaps-0.5-2.fc24.noarch.rpm Keymap Files for BiCon