bionetgen-2.2.6-3.fc25.i686.rpm


Advertisement

Description

bionetgen - Software for rule-based modeling of biochemical systems

Property Value
Distribution Fedora 25
Repository Fedora i386
Package name bionetgen
Package version 2.2.6
Package release 3.fc25
Package architecture i686
Package type rpm
Installed size 531.53 KB
Download size 205.34 KB
Official Mirror dl.fedoraproject.org
BioNetGen is software for the specification and simulation of
rule-based models of biochemical systems, including signal
transduction, metabolic, and genetic regulatory networks. The
BioNetGen language has recently been extended to include explicit
representation of compartments. A review of methods for rule-based
modeling is available in Science Signaling (Sci. STKE, 18 July 2006,
Issue 344, p. re6).
BioNetGen is presently a mixture of Perl and C++. Network generation
is currently implemented in Perl, the network simulator is C++, and a
new language parser is being developed with ANTLR.

Alternatives

Package Version Architecture Repository
bionetgen-2.2.6-7.fc25.i686.rpm 2.2.6 i686 Fedora Updates
bionetgen-2.2.6-7.fc25.x86_64.rpm 2.2.6 x86_64 Fedora Updates
bionetgen-2.2.6-3.fc25.x86_64.rpm 2.2.6 x86_64 Fedora
bionetgen - - -

Requires

Name Value
bionetgen-perl = 2.2.6-3.fc25
libc.so.6(GLIBC_2.4) -
libgcc_s.so.1 -
libgcc_s.so.1(GCC_3.0) -
libm.so.6 -
libm.so.6(GLIBC_2.0) -
libmuparser.so.2 -
libstdc++.so.6 -
libstdc++.so.6(CXXABI_1.3) -
libstdc++.so.6(CXXABI_1.3.8) -
libstdc++.so.6(CXXABI_1.3.9) -
libstdc++.so.6(GLIBCXX_3.4) -
libstdc++.so.6(GLIBCXX_3.4.11) -
libstdc++.so.6(GLIBCXX_3.4.20) -
libstdc++.so.6(GLIBCXX_3.4.21) -
libstdc++.so.6(GLIBCXX_3.4.9) -
libsundials_cvode.so.1 -
libsundials_nvecserial.so.0 -
perl(:MODULE_COMPAT_5.24.0) -
rtld(GNU_HASH) -

Provides

Name Value
bionetgen = 2.2.6-3.fc25
bionetgen(x86-32) = 2.2.6-3.fc25

Download

Type URL
Binary Package bionetgen-2.2.6-3.fc25.i686.rpm
Source Package bionetgen-2.2.6-3.fc25.src.rpm

Install Howto

Install the bionetgen rpm package:

# dnf install bionetgen

Files

Path
/usr/bin/run_network
/usr/share/doc/bionetgen/CHANGES.txt
/usr/share/doc/bionetgen/CREDITS.txt
/usr/share/doc/bionetgen/README.md
/usr/share/doc/bionetgen/README_FIRST.txt
/usr/share/licenses/bionetgen/LICENSE.txt

Changelog

2016-10-16 - Zbigniew Jędrzejewski-Szmek <zbyszek@in.waw.pl> - 2.2.6-3
- Rebuild for libsundials (#1384636)
2016-05-15 - Jitka Plesnikova <jplesnik@redhat.com> - 2.2.6-2
- Perl 5.24 rebuild
2016-02-11 - Zbigniew Jędrzejewski-Szmek <zbyszek@bupkis> - 2.2.6-1
- Update to latest version
- Fix gcc6 compilation issue (#1306648)
2016-02-03 - Fedora Release Engineering <releng@fedoraproject.org> - 2.2.5-8
- Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild
2015-06-17 - Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.2.5-7
- Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild
2015-06-05 - Jitka Plesnikova <jplesnik@redhat.com> - 2.2.5-6
- Perl 5.22 rebuild
2015-05-02 - Kalev Lember <kalevlember@gmail.com> - 2.2.5-5
- Rebuilt for GCC 5 C++11 ABI change
2015-03-31 - Zbigniew Jędrzejewski-Szmek <zbyszek@in.waw.pl> - 2.2.5-4
- Rebuilt for sundials 2.6.0.
2015-02-26 - Zbigniew Jędrzejewski-Szmek <zbyszek@in.waw.pl> - 2.2.5-3
- Rebuilt for https://fedoraproject.org/wiki/Changes/GCC5 (#1195309)
2014-11-30 - Zbigniew Jędrzejewski-Szmek <zbyszek@in.waw.pl> - 2.2.5-2
- Drop dependency on compat f77, it is not needed.

See Also

Package Description
bionetgen-perl-2.2.6-3.fc25.noarch.rpm Perl scripts used by bionetgen
bios_extract-0-0.16.20150611gita257643.fc24.i686.rpm Tools to extract the different submodules of common legacy bioses
biosdevname-0.6.2-2.fc24.i686.rpm Udev helper for naming devices per BIOS names
bip-0.8.9-10.fc25.i686.rpm IRC Bouncer
bird-1.6.0-1.fc25.i686.rpm BIRD Internet Routing Daemon
bird-doc-1.6.0-1.fc25.i686.rpm BIRD Internet Routing Daemon
bird6-1.6.0-1.fc25.i686.rpm BIRD Internet Routing Daemon
bison-3.0.4-4.fc24.i686.rpm A GNU general-purpose parser generator
bison-devel-3.0.4-4.fc24.i686.rpm -ly library for development using Bison-generated parsers
bison-runtime-3.0.4-4.fc24.i686.rpm Runtime support files used by Bison-generated parsers
bitcoinj-0.14.3-1.fc25.noarch.rpm A Java library implementation of the Bitcoin protocol
bitcoinj-javadoc-0.14.3-1.fc25.noarch.rpm Javadoc for bitcoinj
bitfrost-1.0.19-7.fc25.i686.rpm OLPC bitfrost security modules
bitfrost-sugar-1.0.19-7.fc25.i686.rpm OLPC bitfrost security modules
bitlbee-3.4.2-2.fc25.i686.rpm IRC to other chat networks gateway
Advertisement
Advertisement