bfast-0.7.0a-14.fc24.x86_64.rpm


Advertisement

Description

bfast - Blat-like Fast Accurate Search Tool

Distribution: Fedora 25
Repository: Fedora x86_64
Package name: bfast
Package version: 0.7.0a
Package release: 14.fc24
Package architecture: x86_64
Package type: rpm
Installed size: 2.45 MB
Download size: 733.87 KB
Official Mirror: dl.fedoraproject.org
BFAST facilitates the fast and accurate mapping of short reads to reference sequences. Some advantages of BFAST include: Speed: enables billions of short reads to be mapped quickly. Accuracy: A priori probabilities for mapping reads with defined set of variants. An easy way to measurably tune accuracy at the expense of speed. Specifically, BFAST was designed to facilitate whole-genome resequencing, where mapping billions of short reads with variants is of utmost importance. BFAST supports both Illumina and ABI SOLiD data, as well as any other Next-Generation Sequencing Technology (454, Helicos), with particular emphasis on sensitivity towards errors, SNPs and especially indels. Other algorithms take short-cuts by ignoring errors, certain types of variants (indels), and even require further alignment, all to be the "fastest" (but still not complete). BFAST is able to be tuned to find variants regardless of the error-rate, polymorphism rate, or other factors.

Alternatives

Provides

  • bfast = 0.7.0a-14.fc24
  • bfast(x86-64) = 0.7.0a-14.fc24

    Download

    Install Howto

    Install the bfast rpm package:

    # dnf install bfast

    Files

    • /usr/bin/balignmentscoredistribution
    • /usr/bin/balignsim
    • /usr/bin/bevalsim
    • /usr/bin/bfast
    • /usr/bin/bfast.resubmit.pl
    • /usr/bin/bfast.submit.pl
    • /usr/bin/bgeneratereads
    • /usr/bin/bindexdist
    • /usr/bin/bindexhist
    • /usr/bin/bmfmerge
    • /usr/bin/brepeat
    • /usr/bin/btestindexes
    • /usr/bin/ill2fastq.pl
    • /usr/bin/solid2fastq
    • /usr/share/doc/bfast/AUTHORS
    • /usr/share/doc/bfast/ChangeLog
    • /usr/share/doc/bfast/NEWS
    • /usr/share/doc/bfast/README
    • /usr/share/doc/bfast/bfast-book.pdf
    • /usr/share/licenses/bfast/LICENSE

    Changelog

    2016-02-19 - Ralf Cors├ępius <corsepiu@fedoraproject.org> - 0.7.0a-14 - Let configure honor CFLAGS (F24FTBFS, RHBZ#1307345). - Append -fgnu89-inline to CFLAGS. - Re-enable hardening. - Add %license. - Modernize spec.

    2016-02-03 - Fedora Release Engineering <releng@fedoraproject.org> - 0.7.0a-13 - Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild

    2015-07-05 - Adam Huffman <bloch@verdurin.com> - 0.7.0a-12 - Disable hardened build temporarily to work around configure problem

    2015-06-17 - Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.7.0a-11 - Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild

    2014-08-15 - Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.7.0a-10 - Rebuilt for https://fedoraproject.org/wiki/Fedora_21_22_Mass_Rebuild

    2014-06-07 - Adam Huffman <bloch@verdurin.com> - 0.7.0a-9 - More aarch64 build fixes - Update pthread patch

    2014-06-07 - Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.7.0a-8 - Rebuilt for https://fedoraproject.org/wiki/Fedora_21_Mass_Rebuild

    2014-06-02 - Adam Huffman <bloch@verdurin.com> - 0.7.0a-7 - Fix for building on aarch64

    2013-08-03 - Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.7.0a-6 - Rebuilt for https://fedoraproject.org/wiki/Fedora_20_Mass_Rebuild

    2013-07-17 - Petr Pisar <ppisar@redhat.com> - 0.7.0a-5 - Perl 5.18 rebuild

    Advertisement
    Advertisement