bowtie-1.0.1-6.fc24.x86_64.rpm


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Description

bowtie - An ultrafast, memory-efficient short read aligner

Distribution: Fedora 25
Repository: Fedora x86_64
Package name: bowtie
Package version: 1.0.1
Package release: 6.fc24
Package architecture: x86_64
Package type: rpm
Installed size: 12.94 MB
Download size: 6.89 MB
Official Mirror: dl.fedoraproject.org
Bowtie, an ultrafast, memory-efficient short read aligner for short DNA sequences (reads) from next-gen sequencers. Please cite: Langmead B, et al. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10:R25.

Alternatives

Provides

  • bowtie = 1.0.1-6.fc24
  • bowtie(x86-64) = 1.0.1-6.fc24

    Download

    Install Howto

    Install the bowtie rpm package:

    # dnf install bowtie

    Files

    • /usr/bin/bowtie
    • /usr/bin/bowtie-build
    • /usr/bin/bowtie-inspect
    • /usr/share/bowtie/
    • /usr/share/bowtie/genomes/NC_008253.fna
    • /usr/share/bowtie/indexes/e_coli.1.ebwt
    • /usr/share/bowtie/indexes/e_coli.2.ebwt
    • /usr/share/bowtie/indexes/e_coli.3.ebwt
    • /usr/share/bowtie/indexes/e_coli.4.ebwt
    • /usr/share/bowtie/indexes/e_coli.README
    • /usr/share/bowtie/indexes/e_coli.rev.1.ebwt
    • /usr/share/bowtie/indexes/e_coli.rev.2.ebwt
    • /usr/share/bowtie/reads/e_coli_1000.fa
    • /usr/share/bowtie/reads/e_coli_1000.fq
    • /usr/share/bowtie/reads/e_coli_1000.raw
    • /usr/share/bowtie/reads/e_coli_10000snp.fa
    • /usr/share/bowtie/reads/e_coli_10000snp.fq
    • /usr/share/bowtie/reads/e_coli_1000_1.fa
    • /usr/share/bowtie/reads/e_coli_1000_1.fq
    • /usr/share/bowtie/reads/e_coli_1000_2.fa
    • /usr/share/bowtie/reads/e_coli_1000_2.fq
    • /usr/share/bowtie/scripts/best_verify.pl
    • /usr/share/bowtie/scripts/bs_mapability.pl
    • /usr/share/bowtie/scripts/build_test.sh
    • /usr/share/bowtie/scripts/colorize_fasta.pl
    • /usr/share/bowtie/scripts/colorize_fastq.pl
    • /usr/share/bowtie/scripts/convert_quals.pl
    • /usr/share/bowtie/scripts/fastq_to_tabbed.pl
    • /usr/share/bowtie/scripts/gen_2b_occ_lookup.pl
    • /usr/share/bowtie/scripts/gen_dnamasks2colormask.pl
    • /usr/share/bowtie/scripts/gen_occ_lookup.pl
    • /usr/share/bowtie/scripts/gen_solqual_lookup.pl
    • /usr/share/bowtie/scripts/infer_fraglen.pl
    • /usr/share/bowtie/scripts/make_a_thaliana_tair.sh
    • /usr/share/bowtie/scripts/make_b_taurus_UMD3.sh
    • /usr/share/bowtie/scripts/make_c_elegans.sh
    • /usr/share/bowtie/scripts/make_canFam2.sh
    • /usr/share/bowtie/scripts/make_d_melanogaster.sh
    • /usr/share/bowtie/scripts/make_e_coli.sh
    • /usr/share/bowtie/scripts/make_galGal3.sh
    • /usr/share/bowtie/scripts/make_h_sapiens_ncbi36.sh
    • /usr/share/bowtie/scripts/make_h_sapiens_ncbi37.sh
    • /usr/share/bowtie/scripts/make_hg18.sh
    • /usr/share/bowtie/scripts/make_hg19.sh
    • /usr/share/bowtie/scripts/make_m_musculus_ncbi37.sh
    • /usr/share/bowtie/scripts/make_mm8.sh
    • /usr/share/bowtie/scripts/make_mm9.sh
    • /usr/share/bowtie/scripts/make_rn4.sh
    • /usr/share/bowtie/scripts/make_s_cerevisiae.sh
    • /usr/share/bowtie/scripts/mapability.pl
    • /usr/share/bowtie/scripts/pe_verify.pl
    • /usr/share/bowtie/scripts/random_bowtie_tests.pl
    • /usr/share/bowtie/scripts/random_bowtie_tests.sh
    • /usr/share/bowtie/scripts/random_bowtie_tests_p.sh
    • /usr/share/bowtie/scripts/reconcile_alignments.pl
    • /usr/share/bowtie/scripts/reconcile_alignments_pe.pl
    • /usr/share/doc/bowtie/AUTHORS
    • /usr/share/doc/bowtie/GPL.txt
    • /usr/share/doc/bowtie/LGPL.txt
    • /usr/share/doc/bowtie/MANUAL
    • /usr/share/doc/bowtie/NEWS
    • /usr/share/doc/bowtie/TUTORIAL
    • /usr/share/doc/bowtie/VERSION
    • /usr/share/doc/bowtie/manual.html
    • /usr/share/doc/bowtie/style.css

    Changelog

    2016-02-03 - Fedora Release Engineering <releng@fedoraproject.org> - 1.0.1-6 - Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild

    2015-06-17 - Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.0.1-5 - Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild

    2015-05-02 - Kalev Lember <kalevlember@gmail.com> - 1.0.1-4 - Rebuilt for GCC 5 C++11 ABI change

    2014-08-15 - Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.0.1-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_21_22_Mass_Rebuild

    2014-06-07 - Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.0.1-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_21_Mass_Rebuild

    2014-06-02 - Adam Huffman <bloch@verdurin.com> - 1.0.1-1 - Update to upstream release 1.0.1

    2013-12-04 - Adam Huffman <bloch@verdurin.com> - 1.0.0-2 - Correct licence information (thanks to Dave Love) - Reorganise documentation (thanks to Dave Love) - Fix compilation on ARM

    2013-08-07 - Adam Huffman <bloch@verdurin.com> - 1.0.0-1 - Update to stable upstream release 1.0.0 - Remove unnecessary script patch

    2013-08-03 - Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.12.7-8 - Rebuilt for https://fedoraproject.org/wiki/Fedora_20_Mass_Rebuild

    2013-07-17 - Petr Pisar <ppisar@redhat.com> - 0.12.7-7 - Perl 5.18 rebuild

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