bfast-0.7.0a-15.fc26.x86_64.rpm


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Description

bfast - Blat-like Fast Accurate Search Tool

Property Value
Distribution Fedora 26
Repository Fedora x86_64
Package name bfast
Package version 0.7.0a
Package release 15.fc26
Package architecture x86_64
Package type rpm
Installed size 2.45 MB
Download size 736.33 KB
Official Mirror archives.fedoraproject.org
BFAST facilitates the fast and accurate mapping of short reads to
reference sequences.  Some advantages of BFAST include:
Speed: enables billions of short reads to be mapped quickly.
Accuracy: A priori probabilities for mapping reads with defined set of variants.
An easy way to measurably tune accuracy at the expense of speed.
Specifically, BFAST was designed to facilitate whole-genome
resequencing, where mapping billions of short reads with variants is
of utmost importance.
BFAST supports both Illumina and ABI SOLiD data, as well as any other
Next-Generation Sequencing Technology (454, Helicos), with particular
emphasis on sensitivity towards errors, SNPs and especially
indels. Other algorithms take short-cuts by ignoring errors, certain
types of variants (indels), and even require further alignment, all to
be the "fastest" (but still not complete). BFAST is able to be tuned
to find variants regardless of the error-rate, polymorphism rate, or
other factors.

Alternatives

Package Version Architecture Repository
bfast-0.7.0a-15.fc26.i686.rpm 0.7.0a i686 Fedora
bfast - - -

Requires

Name Value
/usr/bin/perl -
libbz2.so.1()(64bit) -
libc.so.6(GLIBC_2.14)(64bit) -
libm.so.6()(64bit) -
libm.so.6(GLIBC_2.2.5)(64bit) -
libpthread.so.0()(64bit) -
libpthread.so.0(GLIBC_2.2.5)(64bit) -
libz.so.1()(64bit) -
perl(Cwd) -
perl(Data::Dumper) -
perl(File::Path) -
perl(Getopt::Long) -
perl(Getopt::Std) -
perl(Pod::Usage) -
perl(XML::Simple) -
perl(constant) -
perl(strict) -
perl(warnings) -
rtld(GNU_HASH) -

Provides

Name Value
bfast = 0.7.0a-15.fc26
bfast(x86-64) = 0.7.0a-15.fc26

Download

Type URL
Binary Package bfast-0.7.0a-15.fc26.x86_64.rpm
Source Package bfast-0.7.0a-15.fc26.src.rpm

Install Howto

Install the bfast rpm package:

# dnf install bfast

Files

Path
/usr/bin/balignmentscoredistribution
/usr/bin/balignsim
/usr/bin/bevalsim
/usr/bin/bfast
/usr/bin/bfast.resubmit.pl
/usr/bin/bfast.submit.pl
/usr/bin/bgeneratereads
/usr/bin/bindexdist
/usr/bin/bindexhist
/usr/bin/bmfmerge
/usr/bin/brepeat
/usr/bin/btestindexes
/usr/bin/ill2fastq.pl
/usr/bin/solid2fastq
/usr/share/doc/bfast/AUTHORS
/usr/share/doc/bfast/ChangeLog
/usr/share/doc/bfast/NEWS
/usr/share/doc/bfast/README
/usr/share/doc/bfast/bfast-book.pdf
/usr/share/licenses/bfast/LICENSE

Changelog

2017-02-10 - Fedora Release Engineering <releng@fedoraproject.org> - 0.7.0a-15
- Rebuilt for https://fedoraproject.org/wiki/Fedora_26_Mass_Rebuild
2016-02-19 - Ralf Cors├ępius <corsepiu@fedoraproject.org> - 0.7.0a-14
- Let configure honor CFLAGS (F24FTBFS, RHBZ#1307345).
- Append -fgnu89-inline to CFLAGS.
- Re-enable hardening.
- Add %license.
- Modernize spec.
2016-02-03 - Fedora Release Engineering <releng@fedoraproject.org> - 0.7.0a-13
- Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild
2015-07-05 - Adam Huffman <bloch@verdurin.com> - 0.7.0a-12
- Disable hardened build temporarily to work around configure problem
2015-06-17 - Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.7.0a-11
- Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild
2014-08-15 - Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.7.0a-10
- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_22_Mass_Rebuild
2014-06-07 - Adam Huffman <bloch@verdurin.com> - 0.7.0a-9
- More aarch64 build fixes
- Update pthread patch
2014-06-07 - Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.7.0a-8
- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_Mass_Rebuild
2014-06-02 - Adam Huffman <bloch@verdurin.com> - 0.7.0a-7
- Fix for building on aarch64
2013-08-03 - Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.7.0a-6
- Rebuilt for https://fedoraproject.org/wiki/Fedora_20_Mass_Rebuild

See Also

Package Description
bharati-m17n-1.2-9.fc26.noarch.rpm Bharati input method based on InScript layout
bib2html-1.2.1-16.fc26.x86_64.rpm Converting bibTeX file to HTML
biber-2.6-4.fc26.noarch.rpm Command-line bibliographic manager, BibTeX replacement
biblesync-1.1.2-6.fc26.i686.rpm A Cross-platform library for sharing Bible navigation
biblesync-1.1.2-6.fc26.x86_64.rpm A Cross-platform library for sharing Bible navigation
biblesync-devel-1.1.2-6.fc26.i686.rpm Development files for biblesync
biblesync-devel-1.1.2-6.fc26.x86_64.rpm Development files for biblesync
bibletime-2.11.0-4.fc26.x86_64.rpm An easy to use Bible study tool
bibtex2html-1.97-12.fc26.x86_64.rpm Collection of tools for translating from BibTeX to HTML
bibus-1.5.2-2.fc26.x86_64.rpm Bibliographic and reference management software
bibutils-5.5-4.fc26.x86_64.rpm Bibliography conversion tools
bibutils-devel-5.5-4.fc26.i686.rpm Development files for bibutils
bibutils-devel-5.5-4.fc26.x86_64.rpm Development files for bibutils
bibutils-libs-5.5-4.fc26.i686.rpm Bibutils library
bibutils-libs-5.5-4.fc26.x86_64.rpm Bibutils library
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