bowtie-1.0.1-7.fc26.x86_64.rpm


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Description

bowtie - An ultrafast, memory-efficient short read aligner

Property Value
Distribution Fedora 26
Repository Fedora x86_64
Package name bowtie
Package version 1.0.1
Package release 7.fc26
Package architecture x86_64
Package type rpm
Installed size 12.97 MB
Download size 6.90 MB
Official Mirror archives.fedoraproject.org
Bowtie, an ultrafast, memory-efficient short read aligner for short
DNA sequences (reads) from next-gen sequencers. Please cite: Langmead
B, et al. Ultrafast and memory-efficient alignment of short DNA
sequences to the human genome. Genome Biol 10:R25.

Alternatives

Package Version Architecture Repository
bowtie-1.0.1-7.fc26.i686.rpm 1.0.1 i686 Fedora
bowtie - - -

Requires

Name Value
/usr/bin/perl -
libc.so.6(GLIBC_2.14)(64bit) -
libgcc_s.so.1()(64bit) -
libgcc_s.so.1(GCC_3.0)(64bit) -
libm.so.6()(64bit) -
libm.so.6(GLIBC_2.2.5)(64bit) -
libpthread.so.0()(64bit) -
libpthread.so.0(GLIBC_2.2.5)(64bit) -
libstdc++.so.6()(64bit) -
libstdc++.so.6(CXXABI_1.3)(64bit) -
libstdc++.so.6(CXXABI_1.3.8)(64bit) -
libstdc++.so.6(CXXABI_1.3.9)(64bit) -
libstdc++.so.6(GLIBCXX_3.4)(64bit) -
libstdc++.so.6(GLIBCXX_3.4.11)(64bit) -
libstdc++.so.6(GLIBCXX_3.4.20)(64bit) -
libstdc++.so.6(GLIBCXX_3.4.21)(64bit) -
libstdc++.so.6(GLIBCXX_3.4.9)(64bit) -
perl(FindBin) -
perl(Getopt::Long) -
perl(List::Util) -
perl(strict) -
perl(warnings) -
rtld(GNU_HASH) -

Provides

Name Value
bowtie = 1.0.1-7.fc26
bowtie(x86-64) = 1.0.1-7.fc26

Download

Type URL
Binary Package bowtie-1.0.1-7.fc26.x86_64.rpm
Source Package bowtie-1.0.1-7.fc26.src.rpm

Install Howto

Install the bowtie rpm package:

# dnf install bowtie

Files

Path
/usr/bin/bowtie
/usr/bin/bowtie-build
/usr/bin/bowtie-inspect
/usr/share/bowtie/
/usr/share/bowtie/genomes/NC_008253.fna
/usr/share/bowtie/indexes/e_coli.1.ebwt
/usr/share/bowtie/indexes/e_coli.2.ebwt
/usr/share/bowtie/indexes/e_coli.3.ebwt
/usr/share/bowtie/indexes/e_coli.4.ebwt
/usr/share/bowtie/indexes/e_coli.README
/usr/share/bowtie/indexes/e_coli.rev.1.ebwt
/usr/share/bowtie/indexes/e_coli.rev.2.ebwt
/usr/share/bowtie/reads/e_coli_1000.fa
/usr/share/bowtie/reads/e_coli_1000.fq
/usr/share/bowtie/reads/e_coli_1000.raw
/usr/share/bowtie/reads/e_coli_10000snp.fa
/usr/share/bowtie/reads/e_coli_10000snp.fq
/usr/share/bowtie/reads/e_coli_1000_1.fa
/usr/share/bowtie/reads/e_coli_1000_1.fq
/usr/share/bowtie/reads/e_coli_1000_2.fa
/usr/share/bowtie/reads/e_coli_1000_2.fq
/usr/share/bowtie/scripts/best_verify.pl
/usr/share/bowtie/scripts/bs_mapability.pl
/usr/share/bowtie/scripts/build_test.sh
/usr/share/bowtie/scripts/colorize_fasta.pl
/usr/share/bowtie/scripts/colorize_fastq.pl
/usr/share/bowtie/scripts/convert_quals.pl
/usr/share/bowtie/scripts/fastq_to_tabbed.pl
/usr/share/bowtie/scripts/gen_2b_occ_lookup.pl
/usr/share/bowtie/scripts/gen_dnamasks2colormask.pl
/usr/share/bowtie/scripts/gen_occ_lookup.pl
/usr/share/bowtie/scripts/gen_solqual_lookup.pl
/usr/share/bowtie/scripts/infer_fraglen.pl
/usr/share/bowtie/scripts/make_a_thaliana_tair.sh
/usr/share/bowtie/scripts/make_b_taurus_UMD3.sh
/usr/share/bowtie/scripts/make_c_elegans.sh
/usr/share/bowtie/scripts/make_canFam2.sh
/usr/share/bowtie/scripts/make_d_melanogaster.sh
/usr/share/bowtie/scripts/make_e_coli.sh
/usr/share/bowtie/scripts/make_galGal3.sh
/usr/share/bowtie/scripts/make_h_sapiens_ncbi36.sh
/usr/share/bowtie/scripts/make_h_sapiens_ncbi37.sh
/usr/share/bowtie/scripts/make_hg18.sh
/usr/share/bowtie/scripts/make_hg19.sh
/usr/share/bowtie/scripts/make_m_musculus_ncbi37.sh
/usr/share/bowtie/scripts/make_mm8.sh
/usr/share/bowtie/scripts/make_mm9.sh
/usr/share/bowtie/scripts/make_rn4.sh
/usr/share/bowtie/scripts/make_s_cerevisiae.sh
/usr/share/bowtie/scripts/mapability.pl
/usr/share/bowtie/scripts/pe_verify.pl
/usr/share/bowtie/scripts/random_bowtie_tests.pl
/usr/share/bowtie/scripts/random_bowtie_tests.sh
/usr/share/bowtie/scripts/random_bowtie_tests_p.sh
/usr/share/bowtie/scripts/reconcile_alignments.pl
/usr/share/bowtie/scripts/reconcile_alignments_pe.pl
/usr/share/doc/bowtie/AUTHORS
/usr/share/doc/bowtie/GPL.txt
/usr/share/doc/bowtie/LGPL.txt
/usr/share/doc/bowtie/MANUAL
/usr/share/doc/bowtie/NEWS
/usr/share/doc/bowtie/TUTORIAL
/usr/share/doc/bowtie/VERSION
/usr/share/doc/bowtie/manual.html
/usr/share/doc/bowtie/style.css

Changelog

2017-02-10 - Fedora Release Engineering <releng@fedoraproject.org> - 1.0.1-7
- Rebuilt for https://fedoraproject.org/wiki/Fedora_26_Mass_Rebuild
2016-02-03 - Fedora Release Engineering <releng@fedoraproject.org> - 1.0.1-6
- Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild
2015-06-17 - Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.0.1-5
- Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild
2015-05-02 - Kalev Lember <kalevlember@gmail.com> - 1.0.1-4
- Rebuilt for GCC 5 C++11 ABI change
2014-08-15 - Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.0.1-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_22_Mass_Rebuild
2014-06-07 - Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.0.1-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_Mass_Rebuild
2014-06-02 - Adam Huffman <bloch@verdurin.com> - 1.0.1-1
- Update to upstream release 1.0.1
2013-12-04 - Adam Huffman <bloch@verdurin.com> - 1.0.0-2
- Correct licence information (thanks to Dave Love)
- Reorganise documentation (thanks to Dave Love)
- Fix compilation on ARM
2013-08-07 - Adam Huffman <bloch@verdurin.com> - 1.0.0-1
- Update to stable upstream release 1.0.0
- Remove unnecessary script patch
2013-08-03 - Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.12.7-8
- Rebuilt for https://fedoraproject.org/wiki/Fedora_20_Mass_Rebuild

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