R-Biostrings-2.44.0-4.fc27.i686.rpm


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Description

R-Biostrings - String objects representing biological sequences

Property Value
Distribution Fedora 27
Repository Fedora Updates i386
Package name R-Biostrings
Package version 2.44.0
Package release 4.fc27
Package architecture i686
Package type rpm
Installed size 15.12 MB
Download size 13.58 MB
Official Mirror dl.fedoraproject.org
Memory efficient string containers, string matching algorithms, and other
utilities, for fast manipulation of large biological sequences or set of
sequences.

Alternatives

Package Version Architecture Repository
R-Biostrings-2.44.0-4.fc27.x86_64.rpm 2.44.0 x86_64 Fedora Updates
R-Biostrings-2.44.0-3.fc27.i686.rpm 2.44.0 i686 Fedora
R-Biostrings-2.44.0-3.fc27.x86_64.rpm 2.44.0 x86_64 Fedora
R-Biostrings - - -

Requires

Name Value
R-Biobase -
R-BiocGenerics >= 0.15.6
R-IRanges >= 2.9.18
R-S4Vectors >= 0.13.13
R-XVector >= 0.11.6
R-core >= 3.4.0
R-graphics -
R-methods -
R-stats -
R-utils -
libR.so -
libc.so.6(GLIBC_2.7) -
rtld(GNU_HASH) -

Provides

Name Value
R-Biostrings = 2.44.0-4.fc27
R-Biostrings(x86-32) = 2.44.0-4.fc27

Download

Type URL
Binary Package R-Biostrings-2.44.0-4.fc27.i686.rpm
Source Package R-Biostrings-2.44.0-4.fc27.src.rpm

Install Howto

Install the R-Biostrings rpm package:

# dnf install R-Biostrings

Files

Path
/usr/lib/.build-id/
/usr/lib/.build-id/aa/d7af65369a5da180c809436388f6542901dc88
/usr/lib/R/library/Biostrings/DESCRIPTION
/usr/lib/R/library/Biostrings/INDEX
/usr/lib/R/library/Biostrings/NAMESPACE
/usr/lib/R/library/Biostrings/NEWS
/usr/lib/R/library/Biostrings/Meta/Rd.rds
/usr/lib/R/library/Biostrings/Meta/data.rds
/usr/lib/R/library/Biostrings/Meta/features.rds
/usr/lib/R/library/Biostrings/Meta/hsearch.rds
/usr/lib/R/library/Biostrings/Meta/links.rds
/usr/lib/R/library/Biostrings/Meta/nsInfo.rds
/usr/lib/R/library/Biostrings/Meta/package.rds
/usr/lib/R/library/Biostrings/Meta/vignette.rds
/usr/lib/R/library/Biostrings/R/Biostrings
/usr/lib/R/library/Biostrings/R/Biostrings.rdb
/usr/lib/R/library/Biostrings/R/Biostrings.rdx
/usr/lib/R/library/Biostrings/data/BLOSUM100.rda
/usr/lib/R/library/Biostrings/data/BLOSUM45.rda
/usr/lib/R/library/Biostrings/data/BLOSUM50.rda
/usr/lib/R/library/Biostrings/data/BLOSUM62.rda
/usr/lib/R/library/Biostrings/data/BLOSUM80.rda
/usr/lib/R/library/Biostrings/data/HNF4alpha.rda
/usr/lib/R/library/Biostrings/data/PAM120.rda
/usr/lib/R/library/Biostrings/data/PAM250.rda
/usr/lib/R/library/Biostrings/data/PAM30.rda
/usr/lib/R/library/Biostrings/data/PAM40.rda
/usr/lib/R/library/Biostrings/data/PAM70.rda
/usr/lib/R/library/Biostrings/data/phiX174Phage.rda
/usr/lib/R/library/Biostrings/data/srPhiX174.rda
/usr/lib/R/library/Biostrings/data/yeastSEQCHR1.rda
/usr/lib/R/library/Biostrings/doc/Biostrings2Classes.R
/usr/lib/R/library/Biostrings/doc/Biostrings2Classes.Rnw
/usr/lib/R/library/Biostrings/doc/Biostrings2Classes.pdf
/usr/lib/R/library/Biostrings/doc/BiostringsQuickOverview.Rnw
/usr/lib/R/library/Biostrings/doc/BiostringsQuickOverview.pdf
/usr/lib/R/library/Biostrings/doc/MultipleAlignments.R
/usr/lib/R/library/Biostrings/doc/MultipleAlignments.Rnw
/usr/lib/R/library/Biostrings/doc/MultipleAlignments.pdf
/usr/lib/R/library/Biostrings/doc/PairwiseAlignments.R
/usr/lib/R/library/Biostrings/doc/PairwiseAlignments.Rnw
/usr/lib/R/library/Biostrings/doc/PairwiseAlignments.pdf
/usr/lib/R/library/Biostrings/doc/index.html
/usr/lib/R/library/Biostrings/doc/matchprobes.R
/usr/lib/R/library/Biostrings/doc/matchprobes.Rnw
/usr/lib/R/library/Biostrings/doc/matchprobes.pdf
/usr/lib/R/library/Biostrings/extdata/Phylip.txt
/usr/lib/R/library/Biostrings/extdata/README
/usr/lib/R/library/Biostrings/extdata/Sc.fa
/usr/lib/R/library/Biostrings/extdata/Sp.fa
/usr/lib/R/library/Biostrings/extdata/dm3_upstream2000.fa.gz
/usr/lib/R/library/Biostrings/extdata/fastaEx.fa
/usr/lib/R/library/Biostrings/extdata/hg18chr8_gap.txt
/usr/lib/R/library/Biostrings/extdata/hg18chrY_gap.txt
/usr/lib/R/library/Biostrings/extdata/msx2_mRNA.aln
/usr/lib/R/library/Biostrings/extdata/s_1_sequence.txt
/usr/lib/R/library/Biostrings/extdata/someORF.fa
/usr/lib/R/library/Biostrings/extdata/someORF.fa.gz
/usr/lib/R/library/Biostrings/help/AnIndex
/usr/lib/R/library/Biostrings/help/Biostrings.rdb
/usr/lib/R/library/Biostrings/help/Biostrings.rdx
/usr/lib/R/library/Biostrings/help/aliases.rds
/usr/lib/R/library/Biostrings/help/paths.rds
/usr/lib/R/library/Biostrings/html/00Index.html
/usr/lib/R/library/Biostrings/html/AAString-class.html
/usr/lib/R/library/Biostrings/html/AMINO_ACID_CODE.html
/usr/lib/R/library/Biostrings/html/AlignedXStringSet-class.html
/usr/lib/R/library/Biostrings/html/Biostrings-internals.html
/usr/lib/R/library/Biostrings/html/DNAString-class.html
/usr/lib/R/library/Biostrings/html/GENETIC_CODE.html
/usr/lib/R/library/Biostrings/html/HNF4alpha.html
/usr/lib/R/library/Biostrings/html/IUPAC_CODE_MAP.html
/usr/lib/R/library/Biostrings/html/InDel-class.html
/usr/lib/R/library/Biostrings/html/MIndex-class.html
/usr/lib/R/library/Biostrings/html/MaskedXString-class.html
/usr/lib/R/library/Biostrings/html/MultipleAlignment-class.html
/usr/lib/R/library/Biostrings/html/PDict-class.html
/usr/lib/R/library/Biostrings/html/PairwiseAlignments-class.html
/usr/lib/R/library/Biostrings/html/PairwiseAlignments-io.html
/usr/lib/R/library/Biostrings/html/QualityScaledXStringSet-class.html
/usr/lib/R/library/Biostrings/html/R.css
/usr/lib/R/library/Biostrings/html/RNAString-class.html
/usr/lib/R/library/Biostrings/html/XString-class.html
/usr/lib/R/library/Biostrings/html/XStringPartialMatches-class.html
/usr/lib/R/library/Biostrings/html/XStringQuality-class.html
/usr/lib/R/library/Biostrings/html/XStringSet-class.html
/usr/lib/R/library/Biostrings/html/XStringSet-comparison.html
/usr/lib/R/library/Biostrings/html/XStringSet-io.html
/usr/lib/R/library/Biostrings/html/XStringSetList-class.html
/usr/lib/R/library/Biostrings/html/XStringViews-class.html
/usr/lib/R/library/Biostrings/html/align-utils.html
/usr/lib/R/library/Biostrings/html/chartr.html
/usr/lib/R/library/Biostrings/html/detail.html
/usr/lib/R/library/Biostrings/html/dinucleotideFrequencyTest.html
/usr/lib/R/library/Biostrings/html/findPalindromes.html
/usr/lib/R/library/Biostrings/html/getSeq.html
/usr/lib/R/library/Biostrings/html/gregexpr2.html
/usr/lib/R/library/Biostrings/html/injectHardMask.html
/usr/lib/R/library/Biostrings/html/letter.html
/usr/lib/R/library/Biostrings/html/letterFrequency.html
/usr/lib/R/library/Biostrings/html/longestConsecutive.html
/usr/lib/R/library/Biostrings/html/lowlevel-matching.html
/usr/lib/R/library/Biostrings/html/maskMotif.html
/usr/lib/R/library/Biostrings/html/match-utils.html
/usr/lib/R/library/Biostrings/html/matchLRPatterns.html
/usr/lib/R/library/Biostrings/html/matchPDict-exact.html
/usr/lib/R/library/Biostrings/html/matchPDict-inexact.html
/usr/lib/R/library/Biostrings/html/matchPWM.html
/usr/lib/R/library/Biostrings/html/matchPattern.html
/usr/lib/R/library/Biostrings/html/matchProbePair.html
/usr/lib/R/library/Biostrings/html/matchprobes.html
/usr/lib/R/library/Biostrings/html/misc.html
/usr/lib/R/library/Biostrings/html/needwunsQS.html
/usr/lib/R/library/Biostrings/html/nucleotideFrequency.html
/usr/lib/R/library/Biostrings/html/padAndClip.html
/usr/lib/R/library/Biostrings/html/pairwiseAlignment.html
/usr/lib/R/library/Biostrings/html/phiX174Phage.html
/usr/lib/R/library/Biostrings/html/pid.html
/usr/lib/R/library/Biostrings/html/pmatchPattern.html
/usr/lib/R/library/Biostrings/html/replaceAt.html
/usr/lib/R/library/Biostrings/html/replaceLetterAt.html
/usr/lib/R/library/Biostrings/html/reverseComplement.html
/usr/lib/R/library/Biostrings/html/stringDist.html
/usr/lib/R/library/Biostrings/html/substitution_matrices.html
/usr/lib/R/library/Biostrings/html/toComplex.html
/usr/lib/R/library/Biostrings/html/translate.html
/usr/lib/R/library/Biostrings/html/trimLRPatterns.html
/usr/lib/R/library/Biostrings/html/xscat.html
/usr/lib/R/library/Biostrings/html/yeastSEQCHR1.html
/usr/lib/R/library/Biostrings/libs/Biostrings.so
/usr/lib/R/library/Biostrings/unitTests/test_MultipleAlignment.R
/usr/lib/R/library/Biostrings/unitTests/test_XString.R
/usr/lib/R/library/Biostrings/unitTests/test_XStringSet.R
/usr/lib/R/library/Biostrings/unitTests/test_XStringSetList.R
/usr/lib/R/library/Biostrings/unitTests/test_findPalindromes.R
/usr/lib/R/library/Biostrings/unitTests/test_matchDNAPattern.R.FIXME
/usr/lib/R/library/Biostrings/unitTests/test_matchPDict.R
/usr/lib/R/library/Biostrings/unitTests/test_pairwiseAlignment.R
/usr/lib/R/library/Biostrings/unitTests/test_twoWayAlphabetFrequency.R

Changelog

2018-05-17 - Tom Callaway <spot@fedoraproject.org> - 2.44.0-4
- rebuild for R 3.5.0
2017-08-02 - Fedora Release Engineering <releng@fedoraproject.org> - 2.44.0-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Binutils_Mass_Rebuild
2017-07-26 - Fedora Release Engineering <releng@fedoraproject.org> - 2.44.0-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild
2017-05-24 - Tom Callaway <spot@fedoraproject.org> - 2.44.0-1
- update to 2.44.0
2017-02-10 - Fedora Release Engineering <releng@fedoraproject.org> - 2.38.2-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_26_Mass_Rebuild
2016-02-03 - Fedora Release Engineering <releng@fedoraproject.org> - 2.38.2-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild
2015-12-07 - Tom Callaway <spot@fedoraproject.org> - 2.38.2-1
- update to 2.38.2
2015-06-16 - Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.36.1-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild
2015-05-29 - Tom Callaway <spot@fedoraproject.org> - 2.36.1-1
- update to 2.36.1, drop doc off DESCRIPTION
2014-08-15 - Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.32.0-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_22_Mass_Rebuild

See Also

Package Description
R-Biostrings-devel-2.44.0-4.fc27.i686.rpm Development files for R-Biostrings
R-BufferedMatrix-1.44.0-1.fc27.i686.rpm A matrix data storage object method from bioconductor
R-BufferedMatrix-devel-1.44.0-1.fc27.i686.rpm Development files for R-BufferedMatrix
R-BufferedMatrixMethods-1.44.0-1.fc27.i686.rpm Microarray Data related methods that utlize BufferedMatrix
R-COPASI-4.23.184-9.fc27.i686.rpm COPASI R Bindings
R-Cairo-1.5.9-4.fc27.i686.rpm Use cairo as a high-quality graphics device
R-FMStable-0.1.2-2.fc27.i686.rpm Finite Moment Stable Distributions
R-GenomicAlignments-1.12.1-4.fc27.i686.rpm Representation and manipulation of short genomic alignments
R-GenomicRanges-1.28.3-4.fc27.i686.rpm Representation and manipulation of genomic intervals
R-IRanges-2.10.1-4.fc27.i686.rpm Low-level containers for storing sets of integer ranges
R-IRanges-devel-2.10.1-4.fc27.i686.rpm Development files for R-IRanges
R-IRdisplay-0.5.0-1.fc27.noarch.rpm 'Jupyter' Display Machinery
R-R.devices-2.15.1-2.fc27.noarch.rpm Unified Handling of Graphics Devices
R-R.methodsS3-1.7.1-2.fc27.noarch.rpm S3 Methods Simplified
R-R.oo-1.22.0-1.fc27.noarch.rpm R Object-Oriented Programming with or without References
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