wise2-2.4.1-6.fc27.i686.rpm


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Description

wise2 - Tools for comparison of bio-polymers

Distribution: Fedora 27
Repository: Fedora Updates i386
Package name: wise2
Package version: 2.4.1
Package release: 6.fc27
Package architecture: i686
Package type: rpm
Installed size: 10.87 MB
Download size: 1.43 MB
Official Mirror: dl.fedoraproject.org
Wise2 is a package focused on comparisons of bio-polymers, commonly DNA sequence and protein sequence. A strength of Wise2 is the comparison of DNA sequence at the level of its protein translation. This comparison allows the simultaneous prediction of gene structure with homology based alignment.

Alternatives

Provides

  • config(wise2) = 2.4.1-6.fc27
  • wise2 = 2.4.1-6.fc27
  • wise2(x86-32) = 2.4.1-6.fc27

    Download

    Install Howto

    Install the wise2 rpm package:

    # dnf install wise2

    Files

    • /etc/profile.d/wise2.csh
    • /etc/profile.d/wise2.sh
    • /usr/bin/dba
    • /usr/bin/dnal
    • /usr/bin/estwise
    • /usr/bin/estwisedb
    • /usr/bin/genewise
    • /usr/bin/genewisedb
    • /usr/bin/promoterwise
    • /usr/bin/psw
    • /usr/bin/pswdb
    • /usr/bin/scanwise
    • /usr/bin/scanwise_server
    • /usr/lib/.build-id/
    • /usr/lib/.build-id/2b/2bd11e8a25e6edb6bb4784e2f1bbefdf1e5bd8
    • /usr/lib/.build-id/31/c5f152b2b64ec9ad55dfaabb0ffc540ee9f7f4
    • /usr/lib/.build-id/49/c8aedbced01a38c5c73e1f6a4e55b7a48a8f1a
    • /usr/lib/.build-id/54/47d312cbf5a20ee5d68ffe7c7bbd895d911e29
    • /usr/lib/.build-id/57/686a55b05e0974ac943e2a84172b607ee0e4bb
    • /usr/lib/.build-id/59/215f92448c51073d489311ae5e1e7857f29d07
    • /usr/lib/.build-id/5d/17602ca3ead5a1bd28d0d4ddaa50cd34a01cc1
    • /usr/lib/.build-id/63/d7b07b960a5d9e4a4a155d769f23f87b4aa7fb
    • /usr/lib/.build-id/97/51193488aabaf516ef592c87c2b3af29d6d344
    • /usr/lib/.build-id/db/b751bf0346e686ba659e2caa269e2b49889661
    • /usr/lib/.build-id/fe/69e9c71be0b51e632fe70bf040fe5f81cdc8c7
    • /usr/share/doc/wise2/README
    • /usr/share/licenses/wise2/LICENSE
    • /usr/share/licenses/wise2/LICENSE.GPL
    • /usr/share/licenses/wise2/LICENSE.base
    • /usr/share/licenses/wise2/LICENSE.dyc
    • /usr/share/licenses/wise2/LICENSE.dynlibsrc
    • /usr/share/wise2/BLOSUM30.bla
    • /usr/share/wise2/BLOSUM45.bla
    • /usr/share/wise2/BLOSUM62.bla
    • /usr/share/wise2/BLOSUM80.bla
    • /usr/share/wise2/aa.rnd
    • /usr/share/wise2/cb.tmf
    • /usr/share/wise2/codon.martian
    • /usr/share/wise2/codon.table
    • /usr/share/wise2/gene.stat
    • /usr/share/wise2/gon120.bla
    • /usr/share/wise2/gon160.bla
    • /usr/share/wise2/gon200.bla
    • /usr/share/wise2/gon250.bla
    • /usr/share/wise2/gon350.bla
    • /usr/share/wise2/human.gf
    • /usr/share/wise2/human.gp
    • /usr/share/wise2/human.stats
    • /usr/share/wise2/idenity.bla
    • /usr/share/wise2/methods
    • /usr/share/wise2/pb.gf
    • /usr/share/wise2/pombe.gf
    • /usr/share/wise2/tm.pri
    • /usr/share/wise2/wag55
    • /usr/share/wise2/wag65
    • /usr/share/wise2/wag75
    • /usr/share/wise2/wag85
    • /usr/share/wise2/wise.2
    • /usr/share/wise2/wise.per
    • /usr/share/wise2/worm.gf
    • /usr/share/wise2/examples/HOX.HMM
    • /usr/share/wise2/examples/Q8NAN2.dna
    • /usr/share/wise2/examples/Q8NAN2.pep
    • /usr/share/wise2/examples/README
    • /usr/share/wise2/examples/alignwise.gen
    • /usr/share/wise2/examples/db.hmm
    • /usr/share/wise2/examples/dummy_hox.dna
    • /usr/share/wise2/examples/epo.genomic
    • /usr/share/wise2/examples/epo.pep
    • /usr/share/wise2/examples/fugu.gen
    • /usr/share/wise2/examples/fugu_human.pep
    • /usr/share/wise2/examples/hn_est.fa
    • /usr/share/wise2/examples/human.genomic
    • /usr/share/wise2/examples/jason.dna
    • /usr/share/wise2/examples/jason.pep
    • /usr/share/wise2/examples/keratin_intron.human
    • /usr/share/wise2/examples/keratin_intron.mouse
    • /usr/share/wise2/examples/pep.fa
    • /usr/share/wise2/examples/phased_roa1.pep
    • /usr/share/wise2/examples/road.pep
    • /usr/share/wise2/examples/rpo_fugu.gen
    • /usr/share/wise2/examples/rpo_h_f.anchor
    • /usr/share/wise2/examples/rpo_h_m.anchor
    • /usr/share/wise2/examples/rpo_h_r.anchor
    • /usr/share/wise2/examples/rpo_human.gen
    • /usr/share/wise2/examples/rpo_human.intron
    • /usr/share/wise2/examples/rpo_human.pep
    • /usr/share/wise2/examples/rpo_mouse.gen
    • /usr/share/wise2/examples/rpo_rat.gen
    • /usr/share/wise2/examples/rrm.HMM
    • /usr/share/wise2/examples/rua1.pep
    • /usr/share/wise2/examples/vav.dna
    • /usr/share/wise2/examples/vav_promoter.human
    • /usr/share/wise2/examples/vav_promoter.mouse
    • /usr/share/wise2/examples/xeno.cdna
    • /usr/share/wise2/examples/xeno.pep

    Changelog

    2018-02-22 - Antonio Trande <sagitter@fedoraproject.org> - 2.4.1-6 - Add gcc perl BR

    2018-02-09 - Fedora Release Engineering <releng@fedoraproject.org> - 2.4.1-5 - Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild

    2017-08-03 - Fedora Release Engineering <releng@fedoraproject.org> - 2.4.1-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Binutils_Mass_Rebuild

    2017-07-27 - Fedora Release Engineering <releng@fedoraproject.org> - 2.4.1-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild

    2017-02-11 - Fedora Release Engineering <releng@fedoraproject.org> - 2.4.1-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_26_Mass_Rebuild

    2015-05-05 - Antonio Trande <sagitterATfedoraproject.org> - 2.4.1-1 - Update to 2.4.1 - Fix compiler flags

    2013-08-04 - Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.2.0-12 - Rebuilt for https://fedoraproject.org/wiki/Fedora_20_Mass_Rebuild

    2013-02-15 - Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.2.0-11 - Rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild

    2012-07-22 - Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.2.0-10 - Rebuilt for https://fedoraproject.org/wiki/Fedora_18_Mass_Rebuild

    2012-01-14 - Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.2.0-9 - Rebuilt for https://fedoraproject.org/wiki/Fedora_17_Mass_Rebuild

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