R-GenomicAlignments-1.12.1-4.fc27.x86_64.rpm


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Description

R-GenomicAlignments - Representation and manipulation of short genomic alignments

Property Value
Distribution Fedora 27
Repository Fedora Updates x86_64
Package name R-GenomicAlignments
Package version 1.12.1
Package release 4.fc27
Package architecture x86_64
Package type rpm
Installed size 2.82 MB
Download size 1.91 MB
Official Mirror dl.fedoraproject.org
Provides efficient containers for storing and manipulating short genomic
alignments (typically obtained by aligning short reads to a reference genome).
This includes read counting, computing the coverage, junction detection, and
working with the nucleotide content of the alignments.

Alternatives

Package Version Architecture Repository
R-GenomicAlignments-1.12.1-4.fc27.i686.rpm 1.12.1 i686 Fedora Updates
R-GenomicAlignments-1.12.1-3.fc27.i686.rpm 1.12.1 i686 Fedora
R-GenomicAlignments-1.12.1-3.fc27.x86_64.rpm 1.12.1 x86_64 Fedora
R-GenomicAlignments - - -

Requires

Name Value
R-BiocGenerics >= 0.15.3
R-BiocParallel -
R-Biostrings >= 2.37.1
R-GenomeInfoDb >= 1.11.5
R-GenomicRanges >= 1.27.19
R-IRanges >= 2.5.36
R-Rsamtools >= 1.21.4
R-S4Vectors >= 0.13.13
R-SummarizedExperiment >= 1.5.3
R-core >= 3.3.0
R-methods -
R-stats -
R-utils -
libR.so()(64bit) -
libc.so.6(GLIBC_2.4)(64bit) -
rtld(GNU_HASH) -

Provides

Name Value
R-GenomicAlignments = 1.12.1-4.fc27
R-GenomicAlignments(x86-64) = 1.12.1-4.fc27

Download

Type URL
Binary Package R-GenomicAlignments-1.12.1-4.fc27.x86_64.rpm
Source Package R-GenomicAlignments-1.12.1-4.fc27.src.rpm

Install Howto

Install the R-GenomicAlignments rpm package:

# dnf install R-GenomicAlignments

Files

Path
/usr/lib/.build-id/
/usr/lib/.build-id/51/acd18c56a8d6f499c37eaf3a3a63a92098c2a6
/usr/lib64/R/library/GenomicAlignments/CITATION
/usr/lib64/R/library/GenomicAlignments/DESCRIPTION
/usr/lib64/R/library/GenomicAlignments/INDEX
/usr/lib64/R/library/GenomicAlignments/NAMESPACE
/usr/lib64/R/library/GenomicAlignments/NEWS
/usr/lib64/R/library/GenomicAlignments/Meta/Rd.rds
/usr/lib64/R/library/GenomicAlignments/Meta/features.rds
/usr/lib64/R/library/GenomicAlignments/Meta/hsearch.rds
/usr/lib64/R/library/GenomicAlignments/Meta/links.rds
/usr/lib64/R/library/GenomicAlignments/Meta/nsInfo.rds
/usr/lib64/R/library/GenomicAlignments/Meta/package.rds
/usr/lib64/R/library/GenomicAlignments/Meta/vignette.rds
/usr/lib64/R/library/GenomicAlignments/R/GenomicAlignments
/usr/lib64/R/library/GenomicAlignments/R/GenomicAlignments.rdb
/usr/lib64/R/library/GenomicAlignments/R/GenomicAlignments.rdx
/usr/lib64/R/library/GenomicAlignments/doc/GenomicAlignmentsIntroduction.R
/usr/lib64/R/library/GenomicAlignments/doc/GenomicAlignmentsIntroduction.Rnw
/usr/lib64/R/library/GenomicAlignments/doc/GenomicAlignmentsIntroduction.pdf
/usr/lib64/R/library/GenomicAlignments/doc/OverlapEncodings.R
/usr/lib64/R/library/GenomicAlignments/doc/OverlapEncodings.Rnw
/usr/lib64/R/library/GenomicAlignments/doc/OverlapEncodings.pdf
/usr/lib64/R/library/GenomicAlignments/doc/WorkingWithAlignedNucleotides.R
/usr/lib64/R/library/GenomicAlignments/doc/WorkingWithAlignedNucleotides.Rnw
/usr/lib64/R/library/GenomicAlignments/doc/WorkingWithAlignedNucleotides.pdf
/usr/lib64/R/library/GenomicAlignments/doc/index.html
/usr/lib64/R/library/GenomicAlignments/doc/summarizeOverlaps.R
/usr/lib64/R/library/GenomicAlignments/doc/summarizeOverlaps.Rnw
/usr/lib64/R/library/GenomicAlignments/doc/summarizeOverlaps.pdf
/usr/lib64/R/library/GenomicAlignments/extdata/sm_treated1.bam
/usr/lib64/R/library/GenomicAlignments/extdata/sm_untreated1.bam
/usr/lib64/R/library/GenomicAlignments/help/AnIndex
/usr/lib64/R/library/GenomicAlignments/help/GenomicAlignments.rdb
/usr/lib64/R/library/GenomicAlignments/help/GenomicAlignments.rdx
/usr/lib64/R/library/GenomicAlignments/help/aliases.rds
/usr/lib64/R/library/GenomicAlignments/help/paths.rds
/usr/lib64/R/library/GenomicAlignments/html/00Index.html
/usr/lib64/R/library/GenomicAlignments/html/GAlignmentPairs-class.html
/usr/lib64/R/library/GenomicAlignments/html/GAlignments-class.html
/usr/lib64/R/library/GenomicAlignments/html/GAlignmentsList-class.html
/usr/lib64/R/library/GenomicAlignments/html/GappedReads-class.html
/usr/lib64/R/library/GenomicAlignments/html/OverlapEncodings-class.html
/usr/lib64/R/library/GenomicAlignments/html/R.css
/usr/lib64/R/library/GenomicAlignments/html/cigar-utils.html
/usr/lib64/R/library/GenomicAlignments/html/coordinate-mapping-methods.html
/usr/lib64/R/library/GenomicAlignments/html/coverage-methods.html
/usr/lib64/R/library/GenomicAlignments/html/encodeOverlaps-methods.html
/usr/lib64/R/library/GenomicAlignments/html/findCompatibleOverlaps-methods.html
/usr/lib64/R/library/GenomicAlignments/html/findMateAlignment.html
/usr/lib64/R/library/GenomicAlignments/html/findOverlaps-methods.html
/usr/lib64/R/library/GenomicAlignments/html/findSpliceOverlaps-methods.html
/usr/lib64/R/library/GenomicAlignments/html/intra-range-methods.html
/usr/lib64/R/library/GenomicAlignments/html/junctions-methods.html
/usr/lib64/R/library/GenomicAlignments/html/pileLettersAt.html
/usr/lib64/R/library/GenomicAlignments/html/readGAlignments.html
/usr/lib64/R/library/GenomicAlignments/html/sequenceLayer.html
/usr/lib64/R/library/GenomicAlignments/html/setops-methods.html
/usr/lib64/R/library/GenomicAlignments/html/stackStringsFromBam.html
/usr/lib64/R/library/GenomicAlignments/html/summarizeOverlaps-methods.html
/usr/lib64/R/library/GenomicAlignments/libs/GenomicAlignments.so
/usr/lib64/R/library/GenomicAlignments/unitTests/test_GAlignments-class.R
/usr/lib64/R/library/GenomicAlignments/unitTests/test_GAlignmentsList-class.R
/usr/lib64/R/library/GenomicAlignments/unitTests/test_cigar-utils.R
/usr/lib64/R/library/GenomicAlignments/unitTests/test_coordinate-mapping-methods.R
/usr/lib64/R/library/GenomicAlignments/unitTests/test_findSpliceOverlaps-methods.R
/usr/lib64/R/library/GenomicAlignments/unitTests/test_intra-range-methods.R
/usr/lib64/R/library/GenomicAlignments/unitTests/test_readGAlignmentPairs.R
/usr/lib64/R/library/GenomicAlignments/unitTests/test_readGAlignments.R
/usr/lib64/R/library/GenomicAlignments/unitTests/test_readGAlignmentsList.R
/usr/lib64/R/library/GenomicAlignments/unitTests/test_summarizeOverlaps-methods.R

Changelog

2018-05-18 - Tom Callaway <spot@fedoraproject.org> - 1.12.1-4
- rebuild for R 3.5.0
2017-08-02 - Fedora Release Engineering <releng@fedoraproject.org> - 1.12.1-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Binutils_Mass_Rebuild
2017-07-26 - Fedora Release Engineering <releng@fedoraproject.org> - 1.12.1-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild
2017-05-31 - Tom Callaway <spot@fedoraproject.org> - 1.12.1-1
- initial package

See Also

Package Description
R-GenomicRanges-1.28.3-4.fc27.x86_64.rpm Representation and manipulation of genomic intervals
R-IRanges-2.10.1-4.fc27.x86_64.rpm Low-level containers for storing sets of integer ranges
R-IRanges-devel-2.10.1-4.fc27.i686.rpm Development files for R-IRanges
R-IRanges-devel-2.10.1-4.fc27.x86_64.rpm Development files for R-IRanges
R-IRdisplay-0.5.0-1.fc27.noarch.rpm 'Jupyter' Display Machinery
R-R.devices-2.15.1-2.fc27.noarch.rpm Unified Handling of Graphics Devices
R-R.methodsS3-1.7.1-2.fc27.noarch.rpm S3 Methods Simplified
R-R.oo-1.22.0-1.fc27.noarch.rpm R Object-Oriented Programming with or without References
R-R.utils-2.7.0-1.fc27.noarch.rpm Various Programming Utilities
R-RCurl-1.95.4.8-4.fc27.x86_64.rpm General network (HTTP/FTP) client interface for R
R-RInside-0.2.14-7.fc27.i686.rpm C++ Classes to Embed R in C++ Applications
R-RInside-0.2.14-7.fc27.x86_64.rpm C++ Classes to Embed R in C++ Applications
R-RInside-devel-0.2.14-7.fc27.i686.rpm RInside Development Files
R-RInside-devel-0.2.14-7.fc27.x86_64.rpm RInside Development Files
R-RInside-examples-0.2.14-7.fc27.x86_64.rpm RInside Examples
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