BEDTools-2.26.0-7.fc28.i686.rpm


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Description

BEDTools - A flexible suite of utilities for comparing genomic features

Property Value
Distribution Fedora 28
Repository Fedora i386
Package name BEDTools
Package version 2.26.0
Package release 7.fc28
Package architecture i686
Package type rpm
Installed size 7.87 MB
Download size 4.64 MB
Official Mirror dl.fedoraproject.org
The BEDTools utilities allow one to address common genomics tasks such
as finding feature overlaps and computing coverage. The utilities are
largely based on four widely-used file formats: BED, GFF/GTF, VCF, and
SAM/BAM. Using BEDTools, one can develop sophisticated pipelines that
answer complicated research questions by "streaming" several BEDTools
together.

Alternatives

Package Version Architecture Repository
BEDTools-2.26.0-7.fc28.x86_64.rpm 2.26.0 x86_64 Fedora
BEDTools-2.26.0-7.fc28.i686.rpm 2.26.0 i686 Fedora Updates Testing
BEDTools-2.26.0-7.fc28.x86_64.rpm 2.26.0 x86_64 Fedora Updates Testing
BEDTools - - -

Requires

Name Value
libc.so.6(GLIBC_2.15) -
libgcc_s.so.1 -
libgcc_s.so.1(GCC_3.0) -
libgcc_s.so.1(GLIBC_2.0) -
libm.so.6 -
libm.so.6(GLIBC_2.0) -
libm.so.6(GLIBC_2.23) -
libstdc++.so.6 -
libstdc++.so.6(CXXABI_1.3) -
libstdc++.so.6(CXXABI_1.3.8) -
libstdc++.so.6(CXXABI_1.3.9) -
libstdc++.so.6(GLIBCXX_3.4) -
libstdc++.so.6(GLIBCXX_3.4.11) -
libstdc++.so.6(GLIBCXX_3.4.15) -
libstdc++.so.6(GLIBCXX_3.4.20) -
libstdc++.so.6(GLIBCXX_3.4.21) -
libstdc++.so.6(GLIBCXX_3.4.9) -
libz.so.1 -
rtld(GNU_HASH) -

Provides

Name Value
BEDTools = 2.26.0-7.fc28
BEDTools(x86-32) = 2.26.0-7.fc28

Download

Type URL
Binary Package BEDTools-2.26.0-7.fc28.i686.rpm
Source Package BEDTools-2.26.0-7.fc28.src.rpm

Install Howto

Install the BEDTools rpm package:

# dnf install BEDTools

Files

Path
/usr/bin/annotateBed
/usr/bin/bamToBed
/usr/bin/bamToFastq
/usr/bin/bed12ToBed6
/usr/bin/bedToBam
/usr/bin/bedToIgv
/usr/bin/bedpeToBam
/usr/bin/bedtools
/usr/bin/closestBed
/usr/bin/clusterBed
/usr/bin/complementBed
/usr/bin/coverageBed
/usr/bin/expandCols
/usr/bin/fastaFromBed
/usr/bin/flankBed
/usr/bin/genomeCoverageBed
/usr/bin/getOverlap
/usr/bin/groupBy
/usr/bin/intersectBed
/usr/bin/linksBed
/usr/bin/mapBed
/usr/bin/maskFastaFromBed
/usr/bin/mergeBed
/usr/bin/multiBamCov
/usr/bin/multiIntersectBed
/usr/bin/nucBed
/usr/bin/pairToBed
/usr/bin/pairToPair
/usr/bin/randomBed
/usr/bin/shiftBed
/usr/bin/shuffleBed
/usr/bin/slopBed
/usr/bin/sortBed
/usr/bin/subtractBed
/usr/bin/tagBam
/usr/bin/unionBedGraphs
/usr/bin/windowBed
/usr/bin/windowMaker
/usr/lib/.build-id/
/usr/lib/.build-id/12/269a907c5c9d801d6c76179dc2152d65afe569
/usr/share/BEDTools/
/usr/share/BEDTools/data/aluY.chr1.bed.gz
/usr/share/BEDTools/data/gerp.chr1.bed.gz
/usr/share/BEDTools/data/knownGene.hg18.chr21.bed
/usr/share/BEDTools/data/knownGene.hg18.chr21.short.bed
/usr/share/BEDTools/data/refseq.chr1.exons.bed.gz
/usr/share/BEDTools/data/simpleRepeats.chr1.bed.gz
/usr/share/BEDTools/genomes/human.hg18.genome
/usr/share/BEDTools/genomes/human.hg19.genome
/usr/share/BEDTools/genomes/human.hg38.genome
/usr/share/BEDTools/genomes/mouse.mm10.genome
/usr/share/BEDTools/genomes/mouse.mm8.genome
/usr/share/BEDTools/genomes/mouse.mm9.genome
/usr/share/doc/BEDTools/LICENSE
/usr/share/doc/BEDTools/README.md
/usr/share/doc/BEDTools/RELEASE_HISTORY
/usr/share/doc/BEDTools/html/.buildinfo
/usr/share/doc/BEDTools/html/genindex.html
/usr/share/doc/BEDTools/html/index.html
/usr/share/doc/BEDTools/html/objects.inv
/usr/share/doc/BEDTools/html/search.html
/usr/share/doc/BEDTools/html/searchindex.js
/usr/share/doc/BEDTools/html/_images/barski_binding_site.png
/usr/share/doc/BEDTools/html/_images/bedtoolsMenu.png
/usr/share/doc/BEDTools/html/_images/closest-glyph.png
/usr/share/doc/BEDTools/html/_images/cluster-glyph.png
/usr/share/doc/BEDTools/html/_images/complement-glyph.png
/usr/share/doc/BEDTools/html/_images/flank-glyph.png
/usr/share/doc/BEDTools/html/_images/galaxy-bedtools.png
/usr/share/doc/BEDTools/html/_images/genomecov-glyph.png
/usr/share/doc/BEDTools/html/_images/getfasta-glyph.png
/usr/share/doc/BEDTools/html/_images/github-zip-button.png
/usr/share/doc/BEDTools/html/_images/intersect-glyph.png
/usr/share/doc/BEDTools/html/_images/jaccard-glyph.png
/usr/share/doc/BEDTools/html/_images/map-glyph.png
/usr/share/doc/BEDTools/html/_images/map-speed-comparo.png
/usr/share/doc/BEDTools/html/_images/maskfasta-glyph.png
/usr/share/doc/BEDTools/html/_images/memory-comparo.png
/usr/share/doc/BEDTools/html/_images/merge-glyph.png
/usr/share/doc/BEDTools/html/_images/random-glyph.png
/usr/share/doc/BEDTools/html/_images/reldist-glyph.png
/usr/share/doc/BEDTools/html/_images/reldist-plot.png
/usr/share/doc/BEDTools/html/_images/res-genes.png
/usr/share/doc/BEDTools/html/_images/shuffle-glyph.png
/usr/share/doc/BEDTools/html/_images/slop-glyph.png
/usr/share/doc/BEDTools/html/_images/speed-comparo.png
/usr/share/doc/BEDTools/html/_images/subtract-glyph.png
/usr/share/doc/BEDTools/html/_images/window-glyph.png
/usr/share/doc/BEDTools/html/_sources/index.rst.txt
/usr/share/doc/BEDTools/html/_sources/content/advanced-usage.rst.txt
/usr/share/doc/BEDTools/html/_sources/content/bedtools-suite.rst.txt
/usr/share/doc/BEDTools/html/_sources/content/example-usage.rst.txt
/usr/share/doc/BEDTools/html/_sources/content/faq.rst.txt
/usr/share/doc/BEDTools/html/_sources/content/general-usage.rst.txt
/usr/share/doc/BEDTools/html/_sources/content/history.rst.txt
/usr/share/doc/BEDTools/html/_sources/content/installation.rst.txt
/usr/share/doc/BEDTools/html/_sources/content/overview.rst.txt
/usr/share/doc/BEDTools/html/_sources/content/quick-start.rst.txt
/usr/share/doc/BEDTools/html/_sources/content/related-tools.rst.txt
/usr/share/doc/BEDTools/html/_sources/content/tips-and-tricks.rst.txt
/usr/share/doc/BEDTools/html/_sources/content/tools/annotate.rst.txt
/usr/share/doc/BEDTools/html/_sources/content/tools/bamtobed.rst.txt
/usr/share/doc/BEDTools/html/_sources/content/tools/bamtofastq.rst.txt
/usr/share/doc/BEDTools/html/_sources/content/tools/bed12tobed6.rst.txt
/usr/share/doc/BEDTools/html/_sources/content/tools/bedpetobam.rst.txt
/usr/share/doc/BEDTools/html/_sources/content/tools/bedtobam.rst.txt
/usr/share/doc/BEDTools/html/_sources/content/tools/closest.rst.txt
/usr/share/doc/BEDTools/html/_sources/content/tools/cluster.rst.txt
/usr/share/doc/BEDTools/html/_sources/content/tools/complement.rst.txt
/usr/share/doc/BEDTools/html/_sources/content/tools/coverage.rst.txt
/usr/share/doc/BEDTools/html/_sources/content/tools/expand.rst.txt
/usr/share/doc/BEDTools/html/_sources/content/tools/fisher.rst.txt
/usr/share/doc/BEDTools/html/_sources/content/tools/flank.rst.txt
/usr/share/doc/BEDTools/html/_sources/content/tools/genomecov.rst.txt
/usr/share/doc/BEDTools/html/_sources/content/tools/getfasta.rst.txt
/usr/share/doc/BEDTools/html/_sources/content/tools/groupby.rst.txt
/usr/share/doc/BEDTools/html/_sources/content/tools/igv.rst.txt
/usr/share/doc/BEDTools/html/_sources/content/tools/intersect.rst.txt
/usr/share/doc/BEDTools/html/_sources/content/tools/jaccard.rst.txt
/usr/share/doc/BEDTools/html/_sources/content/tools/links.rst.txt
/usr/share/doc/BEDTools/html/_sources/content/tools/makewindows.rst.txt
/usr/share/doc/BEDTools/html/_sources/content/tools/map.rst.txt
/usr/share/doc/BEDTools/html/_sources/content/tools/maskfasta.rst.txt
/usr/share/doc/BEDTools/html/_sources/content/tools/merge.rst.txt
/usr/share/doc/BEDTools/html/_sources/content/tools/multicov.rst.txt
/usr/share/doc/BEDTools/html/_sources/content/tools/multiinter.rst.txt
/usr/share/doc/BEDTools/html/_sources/content/tools/nuc.rst.txt
/usr/share/doc/BEDTools/html/_sources/content/tools/overlap.rst.txt
/usr/share/doc/BEDTools/html/_sources/content/tools/pairtobed.rst.txt
/usr/share/doc/BEDTools/html/_sources/content/tools/pairtopair.rst.txt
/usr/share/doc/BEDTools/html/_sources/content/tools/random.rst.txt
/usr/share/doc/BEDTools/html/_sources/content/tools/reldist.rst.txt
/usr/share/doc/BEDTools/html/_sources/content/tools/shift.rst.txt
/usr/share/doc/BEDTools/html/_sources/content/tools/shuffle.rst.txt
/usr/share/doc/BEDTools/html/_sources/content/tools/slop.rst.txt
/usr/share/doc/BEDTools/html/_sources/content/tools/sort.rst.txt
/usr/share/doc/BEDTools/html/_sources/content/tools/subtract.rst.txt
/usr/share/doc/BEDTools/html/_sources/content/tools/tag.rst.txt
/usr/share/doc/BEDTools/html/_sources/content/tools/unionbedg.rst.txt
/usr/share/doc/BEDTools/html/_sources/content/tools/window.rst.txt
/usr/share/doc/BEDTools/html/_static/ajax-loader.gif
/usr/share/doc/BEDTools/html/_static/basic.css
/usr/share/doc/BEDTools/html/_static/bedtools.png
/usr/share/doc/BEDTools/html/_static/bedtools.swiss.png
/usr/share/doc/BEDTools/html/_static/classic.css
/usr/share/doc/BEDTools/html/_static/comment-bright.png
/usr/share/doc/BEDTools/html/_static/comment-close.png
/usr/share/doc/BEDTools/html/_static/comment.png
/usr/share/doc/BEDTools/html/_static/default.css
/usr/share/doc/BEDTools/html/_static/doctools.js
/usr/share/doc/BEDTools/html/_static/down-pressed.png
/usr/share/doc/BEDTools/html/_static/down.png
/usr/share/doc/BEDTools/html/_static/file.png
/usr/share/doc/BEDTools/html/_static/jquery-3.1.0.js
/usr/share/doc/BEDTools/html/_static/jquery.js
/usr/share/doc/BEDTools/html/_static/labibi.css
/usr/share/doc/BEDTools/html/_static/labibi.js
/usr/share/doc/BEDTools/html/_static/minus.png
/usr/share/doc/BEDTools/html/_static/plus.png
/usr/share/doc/BEDTools/html/_static/pygments.css
/usr/share/doc/BEDTools/html/_static/rtd.css
/usr/share/doc/BEDTools/html/_static/searchtools.js
/usr/share/doc/BEDTools/html/_static/sidebar.js
/usr/share/doc/BEDTools/html/_static/underscore-1.3.1.js
/usr/share/doc/BEDTools/html/_static/underscore.js
/usr/share/doc/BEDTools/html/_static/up-pressed.png
/usr/share/doc/BEDTools/html/_static/up.png
/usr/share/doc/BEDTools/html/_static/websupport.js
/usr/share/doc/BEDTools/html/content/advanced-usage.html
/usr/share/doc/BEDTools/html/content/bedtools-suite.html
/usr/share/doc/BEDTools/html/content/example-usage.html
/usr/share/doc/BEDTools/html/content/faq.html
/usr/share/doc/BEDTools/html/content/general-usage.html
/usr/share/doc/BEDTools/html/content/history.html
/usr/share/doc/BEDTools/html/content/installation.html
/usr/share/doc/BEDTools/html/content/overview.html
/usr/share/doc/BEDTools/html/content/quick-start.html
/usr/share/doc/BEDTools/html/content/related-tools.html
/usr/share/doc/BEDTools/html/content/tips-and-tricks.html
/usr/share/doc/BEDTools/html/content/tools/annotate.html
/usr/share/doc/BEDTools/html/content/tools/bamtobed.html
/usr/share/doc/BEDTools/html/content/tools/bamtofastq.html
/usr/share/doc/BEDTools/html/content/tools/bed12tobed6.html
/usr/share/doc/BEDTools/html/content/tools/bedpetobam.html
/usr/share/doc/BEDTools/html/content/tools/bedtobam.html
/usr/share/doc/BEDTools/html/content/tools/closest.html
/usr/share/doc/BEDTools/html/content/tools/cluster.html
/usr/share/doc/BEDTools/html/content/tools/complement.html
/usr/share/doc/BEDTools/html/content/tools/coverage.html
/usr/share/doc/BEDTools/html/content/tools/expand.html
/usr/share/doc/BEDTools/html/content/tools/fisher.html
/usr/share/doc/BEDTools/html/content/tools/flank.html
/usr/share/doc/BEDTools/html/content/tools/genomecov.html
/usr/share/doc/BEDTools/html/content/tools/getfasta.html
/usr/share/doc/BEDTools/html/content/tools/groupby.html
/usr/share/doc/BEDTools/html/content/tools/igv.html
/usr/share/doc/BEDTools/html/content/tools/intersect.html
/usr/share/doc/BEDTools/html/content/tools/jaccard.html
/usr/share/doc/BEDTools/html/content/tools/links.html
/usr/share/doc/BEDTools/html/content/tools/makewindows.html
/usr/share/doc/BEDTools/html/content/tools/map.html
/usr/share/doc/BEDTools/html/content/tools/maskfasta.html
/usr/share/doc/BEDTools/html/content/tools/merge.html
/usr/share/doc/BEDTools/html/content/tools/multicov.html
/usr/share/doc/BEDTools/html/content/tools/multiinter.html
/usr/share/doc/BEDTools/html/content/tools/nuc.html
/usr/share/doc/BEDTools/html/content/tools/overlap.html
/usr/share/doc/BEDTools/html/content/tools/pairtobed.html
/usr/share/doc/BEDTools/html/content/tools/pairtopair.html
/usr/share/doc/BEDTools/html/content/tools/random.html
/usr/share/doc/BEDTools/html/content/tools/reldist.html
/usr/share/doc/BEDTools/html/content/tools/shift.html
/usr/share/doc/BEDTools/html/content/tools/shuffle.html
/usr/share/doc/BEDTools/html/content/tools/slop.html
/usr/share/doc/BEDTools/html/content/tools/sort.html
/usr/share/doc/BEDTools/html/content/tools/subtract.html
/usr/share/doc/BEDTools/html/content/tools/tag.html
/usr/share/doc/BEDTools/html/content/tools/unionbedg.html
/usr/share/doc/BEDTools/html/content/tools/window.html

Changelog

2018-03-07 - Adam Williamson <awilliam@redhat.com> - 2.26.0-7
- Rebuild to fix GCC 8 mis-compilation
See https://da.gd/YJVwk ("GCC 8 ABI change on x86_64")
2018-02-07 - Fedora Release Engineering <releng@fedoraproject.org> - 2.26.0-6
- Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild
2017-08-02 - Fedora Release Engineering <releng@fedoraproject.org> - 2.26.0-5
- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Binutils_Mass_Rebuild
2017-07-26 - Fedora Release Engineering <releng@fedoraproject.org> - 2.26.0-4
- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild
2017-02-10 - Fedora Release Engineering <releng@fedoraproject.org> - 2.26.0-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_26_Mass_Rebuild
2016-08-06 - Adam Huffman <bloch@verdurin.com> - 2.26.0-2
- Fix from Kyle Powell to re-enable debuginfo
2016-07-09 - Adam Huffman <bloch@verdurin.com> - 2.26.0-1
- Update to latest upstream release 2.26.0
2016-02-03 - Fedora Release Engineering <releng@fedoraproject.org> - 2.25.0-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild
2015-09-05 - Adam Huffman <bloch@verdurin.com> - 2.25.0-1
- Update to latest upstream release 2.25.0
- Disable upstreamed patches
- Disable double path separator patch for now
2015-08-23 - Adam Huffman <bloch@verdurin.com> - 2.24.0-6
- Fix binary directory path

See Also

Package Description
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BareBonesBrowserLaunch-javadoc-3.1-15.fc28.noarch.rpm Javadoc for BareBonesBrowserLaunch
BibTool-2.67-5.fc28.i686.rpm A Tool for manipulating BibTeX data bases
BitchX-1.2.1-15.fc28.i686.rpm IrcII chat client
BlockOutII-2.5-11.fc28.i686.rpm A free adaptation of the original BlockOut DOS game
Box2D-2.3.1-8.fc28.i686.rpm A 2D Physics Engine for Games
Box2D-devel-2.3.1-8.fc28.i686.rpm Development files for Box2D
CBFlib-0.9.5.15-6.fc28.i686.rpm Crystallographic Binary File and Image Library
CBFlib-devel-0.9.5.15-6.fc28.i686.rpm Header files and library for developing programs with cbf
CCfits-2.5-7.fc28.i686.rpm A C++ interface for cfitsio
CCfits-devel-2.5-7.fc28.i686.rpm Headers for developing programs that will use CCfits
CCfits-doc-2.5-7.fc28.noarch.rpm Documentation for CCfits, includes full API docs
CGAL-4.11.1-1.fc28.i686.rpm Computational Geometry Algorithms Library
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