R-Biostrings-2.48.0-1.fc28.i686.rpm


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Description

R-Biostrings - String objects representing biological sequences

Property Value
Distribution Fedora 28
Repository Fedora Updates i386
Package name R-Biostrings
Package version 2.48.0
Package release 1.fc28
Package architecture i686
Package type rpm
Installed size 15.18 MB
Download size 13.60 MB
Official Mirror download-ib01.fedoraproject.org
Memory efficient string containers, string matching algorithms, and other
utilities, for fast manipulation of large biological sequences or set of
sequences.

Alternatives

Package Version Architecture Repository
R-Biostrings-2.48.0-1.fc28.x86_64.rpm 2.48.0 x86_64 Fedora Updates
R-Biostrings-2.44.0-3.fc27.x86_64.rpm 2.44.0 x86_64 Fedora
R-Biostrings-2.44.0-3.fc27.i686.rpm 2.44.0 i686 Fedora
R-Biostrings - - -

Requires

Name Value
R-Biobase -
R-BiocGenerics >= 0.15.6
R-IRanges >= 2.13.24
R-S4Vectors >= 0.17.25
R-XVector >= 0.19.8
R-core >= 3.4.0
R-graphics -
R-methods -
R-stats -
R-utils -
libR.so -
libc.so.6(GLIBC_2.7) -
rtld(GNU_HASH) -

Provides

Name Value
R-Biostrings = 2.48.0-1.fc28
R-Biostrings(x86-32) = 2.48.0-1.fc28

Download

Type URL
Binary Package R-Biostrings-2.48.0-1.fc28.i686.rpm
Source Package R-Biostrings-2.48.0-1.fc28.src.rpm

Install Howto

Install R-Biostrings rpm package:

# dnf install R-Biostrings

Files

Path
/usr/lib/.build-id/
/usr/lib/.build-id/d8/e9022a586b585f63a2ec09390602b3c8c4c6f4
/usr/lib/R/library/Biostrings/DESCRIPTION
/usr/lib/R/library/Biostrings/INDEX
/usr/lib/R/library/Biostrings/NAMESPACE
/usr/lib/R/library/Biostrings/NEWS
/usr/lib/R/library/Biostrings/Meta/Rd.rds
/usr/lib/R/library/Biostrings/Meta/data.rds
/usr/lib/R/library/Biostrings/Meta/features.rds
/usr/lib/R/library/Biostrings/Meta/hsearch.rds
/usr/lib/R/library/Biostrings/Meta/links.rds
/usr/lib/R/library/Biostrings/Meta/nsInfo.rds
/usr/lib/R/library/Biostrings/Meta/package.rds
/usr/lib/R/library/Biostrings/Meta/vignette.rds
/usr/lib/R/library/Biostrings/R/Biostrings
/usr/lib/R/library/Biostrings/R/Biostrings.rdb
/usr/lib/R/library/Biostrings/R/Biostrings.rdx
/usr/lib/R/library/Biostrings/data/BLOSUM100.rda
/usr/lib/R/library/Biostrings/data/BLOSUM45.rda
/usr/lib/R/library/Biostrings/data/BLOSUM50.rda
/usr/lib/R/library/Biostrings/data/BLOSUM62.rda
/usr/lib/R/library/Biostrings/data/BLOSUM80.rda
/usr/lib/R/library/Biostrings/data/HNF4alpha.rda
/usr/lib/R/library/Biostrings/data/PAM120.rda
/usr/lib/R/library/Biostrings/data/PAM250.rda
/usr/lib/R/library/Biostrings/data/PAM30.rda
/usr/lib/R/library/Biostrings/data/PAM40.rda
/usr/lib/R/library/Biostrings/data/PAM70.rda
/usr/lib/R/library/Biostrings/data/phiX174Phage.rda
/usr/lib/R/library/Biostrings/data/srPhiX174.rda
/usr/lib/R/library/Biostrings/data/yeastSEQCHR1.rda
/usr/lib/R/library/Biostrings/doc/Biostrings2Classes.R
/usr/lib/R/library/Biostrings/doc/Biostrings2Classes.Rnw
/usr/lib/R/library/Biostrings/doc/Biostrings2Classes.pdf
/usr/lib/R/library/Biostrings/doc/BiostringsQuickOverview.Rnw
/usr/lib/R/library/Biostrings/doc/BiostringsQuickOverview.pdf
/usr/lib/R/library/Biostrings/doc/MultipleAlignments.R
/usr/lib/R/library/Biostrings/doc/MultipleAlignments.Rnw
/usr/lib/R/library/Biostrings/doc/MultipleAlignments.pdf
/usr/lib/R/library/Biostrings/doc/PairwiseAlignments.R
/usr/lib/R/library/Biostrings/doc/PairwiseAlignments.Rnw
/usr/lib/R/library/Biostrings/doc/PairwiseAlignments.pdf
/usr/lib/R/library/Biostrings/doc/index.html
/usr/lib/R/library/Biostrings/doc/matchprobes.R
/usr/lib/R/library/Biostrings/doc/matchprobes.Rnw
/usr/lib/R/library/Biostrings/doc/matchprobes.pdf
/usr/lib/R/library/Biostrings/extdata/Phylip.txt
/usr/lib/R/library/Biostrings/extdata/README
/usr/lib/R/library/Biostrings/extdata/Sc.fa
/usr/lib/R/library/Biostrings/extdata/Sp.fa
/usr/lib/R/library/Biostrings/extdata/dm3_upstream2000.fa.gz
/usr/lib/R/library/Biostrings/extdata/fastaEx.fa
/usr/lib/R/library/Biostrings/extdata/hg18chr8_gap.txt
/usr/lib/R/library/Biostrings/extdata/hg18chrY_gap.txt
/usr/lib/R/library/Biostrings/extdata/msx2_mRNA.aln
/usr/lib/R/library/Biostrings/extdata/s_1_sequence.txt
/usr/lib/R/library/Biostrings/extdata/someORF.fa
/usr/lib/R/library/Biostrings/extdata/someORF.fa.gz
/usr/lib/R/library/Biostrings/help/AnIndex
/usr/lib/R/library/Biostrings/help/Biostrings.rdb
/usr/lib/R/library/Biostrings/help/Biostrings.rdx
/usr/lib/R/library/Biostrings/help/aliases.rds
/usr/lib/R/library/Biostrings/help/paths.rds
/usr/lib/R/library/Biostrings/html/00Index.html
/usr/lib/R/library/Biostrings/html/AAString-class.html
/usr/lib/R/library/Biostrings/html/AMINO_ACID_CODE.html
/usr/lib/R/library/Biostrings/html/AlignedXStringSet-class.html
/usr/lib/R/library/Biostrings/html/Biostrings-internals.html
/usr/lib/R/library/Biostrings/html/DNAString-class.html
/usr/lib/R/library/Biostrings/html/GENETIC_CODE.html
/usr/lib/R/library/Biostrings/html/HNF4alpha.html
/usr/lib/R/library/Biostrings/html/IUPAC_CODE_MAP.html
/usr/lib/R/library/Biostrings/html/InDel-class.html
/usr/lib/R/library/Biostrings/html/MIndex-class.html
/usr/lib/R/library/Biostrings/html/MaskedXString-class.html
/usr/lib/R/library/Biostrings/html/MultipleAlignment-class.html
/usr/lib/R/library/Biostrings/html/PDict-class.html
/usr/lib/R/library/Biostrings/html/PairwiseAlignments-class.html
/usr/lib/R/library/Biostrings/html/PairwiseAlignments-io.html
/usr/lib/R/library/Biostrings/html/QualityScaledXStringSet-class.html
/usr/lib/R/library/Biostrings/html/R.css
/usr/lib/R/library/Biostrings/html/RNAString-class.html
/usr/lib/R/library/Biostrings/html/XString-class.html
/usr/lib/R/library/Biostrings/html/XStringPartialMatches-class.html
/usr/lib/R/library/Biostrings/html/XStringQuality-class.html
/usr/lib/R/library/Biostrings/html/XStringSet-class.html
/usr/lib/R/library/Biostrings/html/XStringSet-comparison.html
/usr/lib/R/library/Biostrings/html/XStringSet-io.html
/usr/lib/R/library/Biostrings/html/XStringSetList-class.html
/usr/lib/R/library/Biostrings/html/XStringViews-class.html
/usr/lib/R/library/Biostrings/html/align-utils.html
/usr/lib/R/library/Biostrings/html/chartr.html
/usr/lib/R/library/Biostrings/html/detail.html
/usr/lib/R/library/Biostrings/html/dinucleotideFrequencyTest.html
/usr/lib/R/library/Biostrings/html/findPalindromes.html
/usr/lib/R/library/Biostrings/html/getSeq.html
/usr/lib/R/library/Biostrings/html/gregexpr2.html
/usr/lib/R/library/Biostrings/html/injectHardMask.html
/usr/lib/R/library/Biostrings/html/letter.html
/usr/lib/R/library/Biostrings/html/letterFrequency.html
/usr/lib/R/library/Biostrings/html/longestConsecutive.html
/usr/lib/R/library/Biostrings/html/lowlevel-matching.html
/usr/lib/R/library/Biostrings/html/maskMotif.html
/usr/lib/R/library/Biostrings/html/match-utils.html
/usr/lib/R/library/Biostrings/html/matchLRPatterns.html
/usr/lib/R/library/Biostrings/html/matchPDict-exact.html
/usr/lib/R/library/Biostrings/html/matchPDict-inexact.html
/usr/lib/R/library/Biostrings/html/matchPWM.html
/usr/lib/R/library/Biostrings/html/matchPattern.html
/usr/lib/R/library/Biostrings/html/matchProbePair.html
/usr/lib/R/library/Biostrings/html/matchprobes.html
/usr/lib/R/library/Biostrings/html/misc.html
/usr/lib/R/library/Biostrings/html/needwunsQS.html
/usr/lib/R/library/Biostrings/html/nucleotideFrequency.html
/usr/lib/R/library/Biostrings/html/padAndClip.html
/usr/lib/R/library/Biostrings/html/pairwiseAlignment.html
/usr/lib/R/library/Biostrings/html/phiX174Phage.html
/usr/lib/R/library/Biostrings/html/pid.html
/usr/lib/R/library/Biostrings/html/pmatchPattern.html
/usr/lib/R/library/Biostrings/html/replaceAt.html
/usr/lib/R/library/Biostrings/html/replaceLetterAt.html
/usr/lib/R/library/Biostrings/html/reverseComplement.html
/usr/lib/R/library/Biostrings/html/stringDist.html
/usr/lib/R/library/Biostrings/html/substitution_matrices.html
/usr/lib/R/library/Biostrings/html/toComplex.html
/usr/lib/R/library/Biostrings/html/translate.html
/usr/lib/R/library/Biostrings/html/trimLRPatterns.html
/usr/lib/R/library/Biostrings/html/xscat.html
/usr/lib/R/library/Biostrings/html/yeastSEQCHR1.html
/usr/lib/R/library/Biostrings/libs/Biostrings.so
/usr/lib/R/library/Biostrings/unitTests/test_MultipleAlignment.R
/usr/lib/R/library/Biostrings/unitTests/test_XString.R
/usr/lib/R/library/Biostrings/unitTests/test_XStringSet.R
/usr/lib/R/library/Biostrings/unitTests/test_XStringSetList.R
/usr/lib/R/library/Biostrings/unitTests/test_findPalindromes.R
/usr/lib/R/library/Biostrings/unitTests/test_matchDNAPattern.R.FIXME
/usr/lib/R/library/Biostrings/unitTests/test_matchPDict.R
/usr/lib/R/library/Biostrings/unitTests/test_pairwiseAlignment.R
/usr/lib/R/library/Biostrings/unitTests/test_twoWayAlphabetFrequency.R

Changelog

2018-05-16 - Tom Callaway <spot@fedoraproject.org> - 2.48.0-1
- update to 2.48.0
2018-02-07 - Fedora Release Engineering <releng@fedoraproject.org> - 2.44.0-4
- Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild
2017-08-02 - Fedora Release Engineering <releng@fedoraproject.org> - 2.44.0-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Binutils_Mass_Rebuild
2017-07-26 - Fedora Release Engineering <releng@fedoraproject.org> - 2.44.0-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild
2017-05-24 - Tom Callaway <spot@fedoraproject.org> - 2.44.0-1
- update to 2.44.0
2017-02-10 - Fedora Release Engineering <releng@fedoraproject.org> - 2.38.2-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_26_Mass_Rebuild
2016-02-03 - Fedora Release Engineering <releng@fedoraproject.org> - 2.38.2-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild
2015-12-07 - Tom Callaway <spot@fedoraproject.org> - 2.38.2-1
- update to 2.38.2
2015-06-16 - Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.36.1-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild
2015-05-29 - Tom Callaway <spot@fedoraproject.org> - 2.36.1-1
- update to 2.36.1, drop doc off DESCRIPTION

See Also

Package Description
R-Biostrings-devel-2.48.0-1.fc28.i686.rpm Development files for R-Biostrings
R-BufferedMatrix-1.44.0-1.fc28.i686.rpm A matrix data storage object method from bioconductor
R-BufferedMatrix-devel-1.44.0-1.fc28.i686.rpm Development files for R-BufferedMatrix
R-BufferedMatrixMethods-1.44.0-1.fc28.i686.rpm Microarray Data related methods that utlize BufferedMatrix
R-COPASI-4.24.197-1.fc28.i686.rpm COPASI R Bindings
R-Cairo-1.5.9-4.fc28.i686.rpm Use cairo as a high-quality graphics device
R-DBI-1.0.0-1.fc28.noarch.rpm Database interface module for R
R-DynDoc-1.58.0-1.fc28.noarch.rpm Functions for dynamic documents
R-FMStable-0.1.2-2.fc28.i686.rpm Finite Moment Stable Distributions
R-GenomeInfoDb-1.16.0-1.fc28.noarch.rpm Utilities for manipulating chromosome and other 'seqname' identifiers
R-GenomicAlignments-1.16.0-1.fc28.i686.rpm Representation and manipulation of short genomic alignments
R-GenomicFeatures-1.32.0-1.fc28.noarch.rpm Tools for making and manipulating transcript centric annotations
R-GenomicRanges-1.32.3-1.fc28.i686.rpm Representation and manipulation of genomic intervals
R-IRanges-2.14.10-1.fc28.i686.rpm Low-level containers for storing sets of integer ranges
R-IRanges-devel-2.14.10-1.fc28.i686.rpm Development files for R-IRanges
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