R-GenomeInfoDb-1.16.0-1.fc28.noarch.rpm


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Description

R-GenomeInfoDb - Utilities for manipulating chromosome and other 'seqname' identifiers

Property Value
Distribution Fedora 28
Repository Fedora Updates i386
Package name R-GenomeInfoDb
Package version 1.16.0
Package release 1.fc28
Package architecture noarch
Package type rpm
Installed size 4.47 MB
Download size 3.56 MB
Official Mirror download-ib01.fedoraproject.org
The Seqnames package contains data and functions that define and allow
translation between different chromosome sequence naming conventions (e.g.,
"chr1" versus "1"), including a function that attempts to place sequence
names in their natural, rather than lexicographic, order.

Alternatives

Package Version Architecture Repository
R-GenomeInfoDb-1.16.0-1.fc28.noarch.rpm 1.16.0 noarch Fedora Updates
R-GenomeInfoDb-1.14.0-1.fc28.noarch.rpm 1.14.0 noarch Fedora Updates Testing
R-GenomeInfoDb-1.14.0-1.fc28.noarch.rpm 1.14.0 noarch Fedora Updates Testing
R-GenomeInfoDb-1.14.0-1.fc28.noarch.rpm 1.14.0 noarch Fedora
R-GenomeInfoDb-1.14.0-1.fc28.noarch.rpm 1.14.0 noarch Fedora
R-GenomeInfoDb - - -

Requires

Name Value
R-BiocGenerics >= 0.13.8
R-GenomeInfoDbData -
R-IRanges >= 2.13.12
R-RCurl -
R-S4Vectors >= 0.17.25
R-core >= 3.1.0
R-methods -
R-stats -
R-stats4 -
R-utils -
tex(latex) -

Provides

Name Value
R-GenomeInfoDb = 1.16.0-1.fc28

Download

Type URL
Binary Package R-GenomeInfoDb-1.16.0-1.fc28.noarch.rpm
Source Package R-GenomeInfoDb-1.16.0-1.fc28.src.rpm

Install Howto

Install R-GenomeInfoDb rpm package:

# dnf install R-GenomeInfoDb

Files

Path
/usr/share/R/library/GenomeInfoDb/DESCRIPTION
/usr/share/R/library/GenomeInfoDb/INDEX
/usr/share/R/library/GenomeInfoDb/NAMESPACE
/usr/share/R/library/GenomeInfoDb/NEWS
/usr/share/R/library/GenomeInfoDb/Meta/Rd.rds
/usr/share/R/library/GenomeInfoDb/Meta/features.rds
/usr/share/R/library/GenomeInfoDb/Meta/hsearch.rds
/usr/share/R/library/GenomeInfoDb/Meta/links.rds
/usr/share/R/library/GenomeInfoDb/Meta/nsInfo.rds
/usr/share/R/library/GenomeInfoDb/Meta/package.rds
/usr/share/R/library/GenomeInfoDb/Meta/vignette.rds
/usr/share/R/library/GenomeInfoDb/R/GenomeInfoDb
/usr/share/R/library/GenomeInfoDb/R/GenomeInfoDb.rdb
/usr/share/R/library/GenomeInfoDb/R/GenomeInfoDb.rdx
/usr/share/R/library/GenomeInfoDb/doc/Accept-organism-for-GenomeInfoDb.R
/usr/share/R/library/GenomeInfoDb/doc/Accept-organism-for-GenomeInfoDb.Rnw
/usr/share/R/library/GenomeInfoDb/doc/Accept-organism-for-GenomeInfoDb.pdf
/usr/share/R/library/GenomeInfoDb/doc/GenomeInfoDb.R
/usr/share/R/library/GenomeInfoDb/doc/GenomeInfoDb.Rnw
/usr/share/R/library/GenomeInfoDb/doc/GenomeInfoDb.pdf
/usr/share/R/library/GenomeInfoDb/doc/index.html
/usr/share/R/library/GenomeInfoDb/extdata/assembly_accessions.rda
/usr/share/R/library/GenomeInfoDb/extdata/dataFiles/Arabidopsis_thaliana.txt
/usr/share/R/library/GenomeInfoDb/extdata/dataFiles/Caenorhabditis_elegans.txt
/usr/share/R/library/GenomeInfoDb/extdata/dataFiles/Canis_familiaris.txt
/usr/share/R/library/GenomeInfoDb/extdata/dataFiles/Cyanidioschyzon_merolae.txt
/usr/share/R/library/GenomeInfoDb/extdata/dataFiles/Drosophila_melanogaster.txt
/usr/share/R/library/GenomeInfoDb/extdata/dataFiles/Homo_sapiens.txt
/usr/share/R/library/GenomeInfoDb/extdata/dataFiles/Mus_musculus.txt
/usr/share/R/library/GenomeInfoDb/extdata/dataFiles/Oryza_sativa.txt
/usr/share/R/library/GenomeInfoDb/extdata/dataFiles/Populus_trichocarpa.txt
/usr/share/R/library/GenomeInfoDb/extdata/dataFiles/Rattus_norvegicus.txt
/usr/share/R/library/GenomeInfoDb/extdata/dataFiles/Saccharomyces_cerevisiae.txt
/usr/share/R/library/GenomeInfoDb/extdata/dataFiles/Zea_mays.txt
/usr/share/R/library/GenomeInfoDb/extdata/dataFiles/genomeMappingTbl.csv
/usr/share/R/library/GenomeInfoDb/help/AnIndex
/usr/share/R/library/GenomeInfoDb/help/GenomeInfoDb.rdb
/usr/share/R/library/GenomeInfoDb/help/GenomeInfoDb.rdx
/usr/share/R/library/GenomeInfoDb/help/aliases.rds
/usr/share/R/library/GenomeInfoDb/help/paths.rds
/usr/share/R/library/GenomeInfoDb/html/00Index.html
/usr/share/R/library/GenomeInfoDb/html/GenomeDescription-class.html
/usr/share/R/library/GenomeInfoDb/html/R.css
/usr/share/R/library/GenomeInfoDb/html/Seqinfo-class.html
/usr/share/R/library/GenomeInfoDb/html/fetchExtendedChromInfoFromUCSC.html
/usr/share/R/library/GenomeInfoDb/html/loadTaxonomyDb.html
/usr/share/R/library/GenomeInfoDb/html/mapGenomeBuilds.html
/usr/share/R/library/GenomeInfoDb/html/rankSeqlevels.html
/usr/share/R/library/GenomeInfoDb/html/seqinfo.html
/usr/share/R/library/GenomeInfoDb/html/seqlevels-wrappers.html
/usr/share/R/library/GenomeInfoDb/html/seqlevelsStyle.html
/usr/share/R/library/GenomeInfoDb/unitTests/test_Seqinfo-class.R
/usr/share/R/library/GenomeInfoDb/unitTests/test_mapGenomeBuilds.R
/usr/share/R/library/GenomeInfoDb/unitTests/test_seqlevels-wrappers.R
/usr/share/R/library/GenomeInfoDb/unitTests/test_seqlevelsStyle.R
/usr/share/R/library/GenomeInfoDb/unitTests/test_utils.R

Changelog

2018-05-17 - Tom Callaway <spot@fedoraproject.org> - 1.16.0-1
- update to 1.16.0
2018-03-14 - Tom Callaway <spot@fedoraproject.org> - 1.14.0-1
- update to 1.14.0
2018-02-07 - Fedora Release Engineering <releng@fedoraproject.org> - 1.12.1-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild
2017-07-26 - Fedora Release Engineering <releng@fedoraproject.org> - 1.12.1-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild
2017-05-30 - Tom Callaway <spot@fedoraproject.org> - 1.12.1-1
- update to 1.12.1
2017-02-10 - Fedora Release Engineering <releng@fedoraproject.org> - 1.4.0-4
- Rebuilt for https://fedoraproject.org/wiki/Fedora_26_Mass_Rebuild
2016-02-03 - Fedora Release Engineering <releng@fedoraproject.org> - 1.4.0-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild
2015-06-16 - Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.4.0-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild
2015-05-29 - Tom Callaway <spot@fedoraproject.org> - 1.4.0-1
- update to 1.4.0
2014-06-09 - Tom Callaway <spot@fedoraproject.org> - 1.0.2-1
- initial package

See Also

Package Description
R-GenomicAlignments-1.16.0-1.fc28.i686.rpm Representation and manipulation of short genomic alignments
R-GenomicFeatures-1.32.0-1.fc28.noarch.rpm Tools for making and manipulating transcript centric annotations
R-GenomicRanges-1.32.3-1.fc28.i686.rpm Representation and manipulation of genomic intervals
R-IRanges-2.14.10-1.fc28.i686.rpm Low-level containers for storing sets of integer ranges
R-IRanges-devel-2.14.10-1.fc28.i686.rpm Development files for R-IRanges
R-IRdisplay-0.5.0-1.fc28.noarch.rpm 'Jupyter' Display Machinery
R-IRkernel-0.8.15-1.fc28.noarch.rpm Native R Kernel for the 'Jupyter Notebook'
R-R.cache-0.13.0-1.fc28.noarch.rpm Fast and Light-Weight Caching (Memoization) of Objects and Results
R-R.devices-2.16.0-1.fc28.noarch.rpm Unified Handling of Graphics Devices
R-R.oo-1.22.0-1.fc28.noarch.rpm R Object-Oriented Programming with or without References
R-R.rsp-0.43.1-1.fc28.noarch.rpm Dynamic Generation of Scientific Reports
R-R.utils-2.7.0-1.fc28.noarch.rpm Various Programming Utilities
R-RColorBrewer-1.1.2-1.fc28.noarch.rpm ColorBrewer Palettes
R-RCurl-1.95.4.10-2.fc28.i686.rpm General network (HTTP/FTP) client interface for R
R-RInside-0.2.14-7.fc28.i686.rpm C++ Classes to Embed R in C++ Applications
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