R-GenomicAlignments-1.16.0-1.fc28.i686.rpm


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Description

R-GenomicAlignments - Representation and manipulation of short genomic alignments

Property Value
Distribution Fedora 28
Repository Fedora Updates i386
Package name R-GenomicAlignments
Package version 1.16.0
Package release 1.fc28
Package architecture i686
Package type rpm
Installed size 2.99 MB
Download size 2.05 MB
Official Mirror download-ib01.fedoraproject.org
Provides efficient containers for storing and manipulating short genomic
alignments (typically obtained by aligning short reads to a reference genome).
This includes read counting, computing the coverage, junction detection, and
working with the nucleotide content of the alignments.

Alternatives

Package Version Architecture Repository
R-GenomicAlignments-1.16.0-1.fc28.x86_64.rpm 1.16.0 x86_64 Fedora Updates
R-GenomicAlignments-1.14.1-1.fc28.x86_64.rpm 1.14.1 x86_64 Fedora Updates Testing
R-GenomicAlignments-1.14.1-1.fc28.i686.rpm 1.14.1 i686 Fedora Updates Testing
R-GenomicAlignments-1.14.1-1.fc28.x86_64.rpm 1.14.1 x86_64 Fedora
R-GenomicAlignments-1.14.1-1.fc28.i686.rpm 1.14.1 i686 Fedora
R-GenomicAlignments - - -

Requires

Name Value
R-BiocGenerics >= 0.15.3
R-BiocParallel -
R-Biostrings >= 2.47.6
R-GenomeInfoDb >= 1.13.1
R-GenomicRanges >= 1.31.19
R-IRanges >= 2.13.25
R-Rsamtools >= 1.31.2
R-S4Vectors >= 0.17.28
R-SummarizedExperiment >= 1.9.13
R-core >= 3.3.0
R-methods -
R-stats -
R-utils -
libR.so -
libc.so.6(GLIBC_2.4) -
rtld(GNU_HASH) -

Provides

Name Value
R-GenomicAlignments = 1.16.0-1.fc28
R-GenomicAlignments(x86-32) = 1.16.0-1.fc28

Download

Type URL
Binary Package R-GenomicAlignments-1.16.0-1.fc28.i686.rpm
Source Package R-GenomicAlignments-1.16.0-1.fc28.src.rpm

Install Howto

Install R-GenomicAlignments rpm package:

# dnf install R-GenomicAlignments

Files

Path
/usr/lib/.build-id/
/usr/lib/.build-id/ff/740559b6f9e122c881d5d8f365fc0656c58ef4
/usr/lib/R/library/GenomicAlignments/CITATION
/usr/lib/R/library/GenomicAlignments/DESCRIPTION
/usr/lib/R/library/GenomicAlignments/INDEX
/usr/lib/R/library/GenomicAlignments/NAMESPACE
/usr/lib/R/library/GenomicAlignments/NEWS
/usr/lib/R/library/GenomicAlignments/Meta/Rd.rds
/usr/lib/R/library/GenomicAlignments/Meta/features.rds
/usr/lib/R/library/GenomicAlignments/Meta/hsearch.rds
/usr/lib/R/library/GenomicAlignments/Meta/links.rds
/usr/lib/R/library/GenomicAlignments/Meta/nsInfo.rds
/usr/lib/R/library/GenomicAlignments/Meta/package.rds
/usr/lib/R/library/GenomicAlignments/Meta/vignette.rds
/usr/lib/R/library/GenomicAlignments/R/GenomicAlignments
/usr/lib/R/library/GenomicAlignments/R/GenomicAlignments.rdb
/usr/lib/R/library/GenomicAlignments/R/GenomicAlignments.rdx
/usr/lib/R/library/GenomicAlignments/doc/GenomicAlignmentsIntroduction.R
/usr/lib/R/library/GenomicAlignments/doc/GenomicAlignmentsIntroduction.Rnw
/usr/lib/R/library/GenomicAlignments/doc/GenomicAlignmentsIntroduction.pdf
/usr/lib/R/library/GenomicAlignments/doc/OverlapEncodings.R
/usr/lib/R/library/GenomicAlignments/doc/OverlapEncodings.Rnw
/usr/lib/R/library/GenomicAlignments/doc/OverlapEncodings.pdf
/usr/lib/R/library/GenomicAlignments/doc/WorkingWithAlignedNucleotides.R
/usr/lib/R/library/GenomicAlignments/doc/WorkingWithAlignedNucleotides.Rnw
/usr/lib/R/library/GenomicAlignments/doc/WorkingWithAlignedNucleotides.pdf
/usr/lib/R/library/GenomicAlignments/doc/index.html
/usr/lib/R/library/GenomicAlignments/doc/summarizeOverlaps.R
/usr/lib/R/library/GenomicAlignments/doc/summarizeOverlaps.Rnw
/usr/lib/R/library/GenomicAlignments/doc/summarizeOverlaps.pdf
/usr/lib/R/library/GenomicAlignments/extdata/sm_treated1.bam
/usr/lib/R/library/GenomicAlignments/extdata/sm_untreated1.bam
/usr/lib/R/library/GenomicAlignments/help/AnIndex
/usr/lib/R/library/GenomicAlignments/help/GenomicAlignments.rdb
/usr/lib/R/library/GenomicAlignments/help/GenomicAlignments.rdx
/usr/lib/R/library/GenomicAlignments/help/aliases.rds
/usr/lib/R/library/GenomicAlignments/help/paths.rds
/usr/lib/R/library/GenomicAlignments/html/00Index.html
/usr/lib/R/library/GenomicAlignments/html/GAlignmentPairs-class.html
/usr/lib/R/library/GenomicAlignments/html/GAlignments-class.html
/usr/lib/R/library/GenomicAlignments/html/GAlignmentsList-class.html
/usr/lib/R/library/GenomicAlignments/html/GappedReads-class.html
/usr/lib/R/library/GenomicAlignments/html/OverlapEncodings-class.html
/usr/lib/R/library/GenomicAlignments/html/R.css
/usr/lib/R/library/GenomicAlignments/html/cigar-utils.html
/usr/lib/R/library/GenomicAlignments/html/coordinate-mapping-methods.html
/usr/lib/R/library/GenomicAlignments/html/coverage-methods.html
/usr/lib/R/library/GenomicAlignments/html/encodeOverlaps-methods.html
/usr/lib/R/library/GenomicAlignments/html/findCompatibleOverlaps-methods.html
/usr/lib/R/library/GenomicAlignments/html/findMateAlignment.html
/usr/lib/R/library/GenomicAlignments/html/findOverlaps-methods.html
/usr/lib/R/library/GenomicAlignments/html/findSpliceOverlaps-methods.html
/usr/lib/R/library/GenomicAlignments/html/intra-range-methods.html
/usr/lib/R/library/GenomicAlignments/html/junctions-methods.html
/usr/lib/R/library/GenomicAlignments/html/pileLettersAt.html
/usr/lib/R/library/GenomicAlignments/html/readGAlignments.html
/usr/lib/R/library/GenomicAlignments/html/sequenceLayer.html
/usr/lib/R/library/GenomicAlignments/html/setops-methods.html
/usr/lib/R/library/GenomicAlignments/html/stackStringsFromBam.html
/usr/lib/R/library/GenomicAlignments/html/summarizeOverlaps-methods.html
/usr/lib/R/library/GenomicAlignments/libs/GenomicAlignments.so
/usr/lib/R/library/GenomicAlignments/unitTests/test_GAlignments-class.R
/usr/lib/R/library/GenomicAlignments/unitTests/test_GAlignmentsList-class.R
/usr/lib/R/library/GenomicAlignments/unitTests/test_cigar-utils.R
/usr/lib/R/library/GenomicAlignments/unitTests/test_coordinate-mapping-methods.R
/usr/lib/R/library/GenomicAlignments/unitTests/test_findSpliceOverlaps-methods.R
/usr/lib/R/library/GenomicAlignments/unitTests/test_intra-range-methods.R
/usr/lib/R/library/GenomicAlignments/unitTests/test_readGAlignmentPairs.R
/usr/lib/R/library/GenomicAlignments/unitTests/test_readGAlignments.R
/usr/lib/R/library/GenomicAlignments/unitTests/test_readGAlignmentsList.R
/usr/lib/R/library/GenomicAlignments/unitTests/test_summarizeOverlaps-methods.R

Changelog

2018-05-17 - Tom Callaway <spot@fedoraproject.org> - 1.16.0-1
- update to 1.16.0
2018-03-14 - Tom Callaway <spot@fedoraproject.org> - 1.14.1-1
- update to 1.14.1
2018-02-07 - Fedora Release Engineering <releng@fedoraproject.org> - 1.12.1-4
- Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild
2017-08-02 - Fedora Release Engineering <releng@fedoraproject.org> - 1.12.1-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Binutils_Mass_Rebuild
2017-07-26 - Fedora Release Engineering <releng@fedoraproject.org> - 1.12.1-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild
2017-05-31 - Tom Callaway <spot@fedoraproject.org> - 1.12.1-1
- initial package

See Also

Package Description
R-GenomicFeatures-1.32.0-1.fc28.noarch.rpm Tools for making and manipulating transcript centric annotations
R-GenomicRanges-1.32.3-1.fc28.i686.rpm Representation and manipulation of genomic intervals
R-IRanges-2.14.10-1.fc28.i686.rpm Low-level containers for storing sets of integer ranges
R-IRanges-devel-2.14.10-1.fc28.i686.rpm Development files for R-IRanges
R-IRdisplay-0.5.0-1.fc28.noarch.rpm 'Jupyter' Display Machinery
R-IRkernel-0.8.15-1.fc28.noarch.rpm Native R Kernel for the 'Jupyter Notebook'
R-R.cache-0.13.0-1.fc28.noarch.rpm Fast and Light-Weight Caching (Memoization) of Objects and Results
R-R.devices-2.16.0-1.fc28.noarch.rpm Unified Handling of Graphics Devices
R-R.oo-1.22.0-1.fc28.noarch.rpm R Object-Oriented Programming with or without References
R-R.rsp-0.43.1-1.fc28.noarch.rpm Dynamic Generation of Scientific Reports
R-R.utils-2.7.0-1.fc28.noarch.rpm Various Programming Utilities
R-RColorBrewer-1.1.2-1.fc28.noarch.rpm ColorBrewer Palettes
R-RCurl-1.95.4.10-2.fc28.i686.rpm General network (HTTP/FTP) client interface for R
R-RInside-0.2.14-7.fc28.i686.rpm C++ Classes to Embed R in C++ Applications
R-RInside-devel-0.2.14-7.fc28.i686.rpm RInside Development Files
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