R-Rsamtools-1.32.0-1.fc28.i686.rpm


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Description

R-Rsamtools - R interface to samtools

Property Value
Distribution Fedora 28
Repository Fedora Updates i386
Package name R-Rsamtools
Package version 1.32.0
Package release 1.fc28
Package architecture i686
Package type rpm
Installed size 4.91 MB
Download size 3.45 MB
Official Mirror download-ib01.fedoraproject.org
This package provides an interface to the 'samtools', 'bcftools',
and 'tabix' utilities (see 'LICENCE') for manipulating SAM
(Sequence Alignment / Map), binary variant call (BCF) and
compressed indexed tab-delimited (tabix) files.

Alternatives

Package Version Architecture Repository
R-Rsamtools-1.32.0-1.fc28.x86_64.rpm 1.32.0 x86_64 Fedora Updates
R-Rsamtools-1.32.0-1.fc28.i686.rpm 1.32.0 i686 Fedora Updates
R-Rsamtools-1.30.0-1.fc28.x86_64.rpm 1.30.0 x86_64 Fedora Updates Testing
R-Rsamtools-1.30.0-1.fc28.i686.rpm 1.30.0 i686 Fedora Updates Testing
R-Rsamtools-1.30.0-1.fc28.i686.rpm 1.30.0 i686 Fedora Updates Testing
R-Rsamtools-1.30.0-1.fc28.x86_64.rpm 1.30.0 x86_64 Fedora
R-Rsamtools-1.30.0-1.fc28.i686.rpm 1.30.0 i686 Fedora
R-Rsamtools-1.30.0-1.fc28.i686.rpm 1.30.0 i686 Fedora
R-Rsamtools - - -

Requires

Name Value
R-BiocGenerics >= 0.25.1
R-BiocParallel -
R-Biostrings >= 2.47.6
R-GenomeInfoDb >= 1.1.3
R-GenomicRanges >= 1.31.8
R-IRanges >= 2.13.12
R-S4Vectors >= 0.17.25
R-XVector >= 0.19.7
R-bitops -
R-core >= 3.0.0
R-methods -
R-utils -
libR.so -
libbam.so.1 -
libc.so.6(GLIBC_2.4) -
libgcc_s.so.1 -
libgcc_s.so.1(GCC_3.0) -
libgomp.so.1 -
libm.so.6 -
libm.so.6(GLIBC_2.0) -
libpthread.so.0 -
libpthread.so.0(GLIBC_2.0) -
libpthread.so.0(GLIBC_2.2) -
libstdc++.so.6 -
libstdc++.so.6(CXXABI_1.3) -
libstdc++.so.6(CXXABI_1.3.9) -
libstdc++.so.6(GLIBCXX_3.4) -
libstdc++.so.6(GLIBCXX_3.4.15) -
libstdc++.so.6(GLIBCXX_3.4.20) -
libz.so.1 -
libz.so.1(ZLIB_1.2.3.3) -
rtld(GNU_HASH) -

Provides

Name Value
R-Rsamtools = 1.32.0-1.fc28
R-Rsamtools(x86-32) = 1.32.0-1.fc28

Download

Type URL
Binary Package R-Rsamtools-1.32.0-1.fc28.i686.rpm
Source Package R-Rsamtools-1.32.0-1.fc28.src.rpm

Install Howto

Install R-Rsamtools rpm package:

# dnf install R-Rsamtools

Files

Path
/usr/lib/.build-id/
/usr/lib/.build-id/4b/052cd0ab021f0153ce90b209a27b78a3120fe4
/usr/lib/R/library/Rsamtools/DESCRIPTION
/usr/lib/R/library/Rsamtools/INDEX
/usr/lib/R/library/Rsamtools/LICENSE
/usr/lib/R/library/Rsamtools/NAMESPACE
/usr/lib/R/library/Rsamtools/NEWS
/usr/lib/R/library/Rsamtools/Meta/Rd.rds
/usr/lib/R/library/Rsamtools/Meta/features.rds
/usr/lib/R/library/Rsamtools/Meta/hsearch.rds
/usr/lib/R/library/Rsamtools/Meta/links.rds
/usr/lib/R/library/Rsamtools/Meta/nsInfo.rds
/usr/lib/R/library/Rsamtools/Meta/package.rds
/usr/lib/R/library/Rsamtools/Meta/vignette.rds
/usr/lib/R/library/Rsamtools/R/Rsamtools
/usr/lib/R/library/Rsamtools/R/Rsamtools.rdb
/usr/lib/R/library/Rsamtools/R/Rsamtools.rdx
/usr/lib/R/library/Rsamtools/doc/Rsamtools-Overview.R
/usr/lib/R/library/Rsamtools/doc/Rsamtools-Overview.Rnw
/usr/lib/R/library/Rsamtools/doc/Rsamtools-Overview.pdf
/usr/lib/R/library/Rsamtools/doc/Rsamtools-UsingCLibraries.R
/usr/lib/R/library/Rsamtools/doc/Rsamtools-UsingCLibraries.Rnw
/usr/lib/R/library/Rsamtools/doc/Rsamtools-UsingCLibraries.pdf
/usr/lib/R/library/Rsamtools/doc/index.html
/usr/lib/R/library/Rsamtools/extdata/ce2dict1.fa
/usr/lib/R/library/Rsamtools/extdata/ce2dict1.fa.fai
/usr/lib/R/library/Rsamtools/extdata/ex1.bam
/usr/lib/R/library/Rsamtools/extdata/ex1.bam.bai
/usr/lib/R/library/Rsamtools/extdata/ex1.bcf
/usr/lib/R/library/Rsamtools/extdata/ex1.bcf.bci
/usr/lib/R/library/Rsamtools/extdata/ex1.sam
/usr/lib/R/library/Rsamtools/extdata/example.gtf.gz
/usr/lib/R/library/Rsamtools/extdata/example.gtf.gz.tbi
/usr/lib/R/library/Rsamtools/extdata/example_from_SAM_Spec.bam
/usr/lib/R/library/Rsamtools/extdata/example_from_SAM_Spec.bam.bai
/usr/lib/R/library/Rsamtools/extdata/example_from_SAM_Spec.sam
/usr/lib/R/library/Rsamtools/extdata/no_which_buffered_pileup.bam
/usr/lib/R/library/Rsamtools/extdata/no_which_buffered_pileup.bam.bai
/usr/lib/R/library/Rsamtools/extdata/no_which_buffered_pileup.sam
/usr/lib/R/library/Rsamtools/extdata/no_which_whole_file.bam
/usr/lib/R/library/Rsamtools/extdata/no_which_whole_file.bam.bai
/usr/lib/R/library/Rsamtools/extdata/no_which_whole_file.sam
/usr/lib/R/library/Rsamtools/extdata/olaps.Rda
/usr/lib/R/library/Rsamtools/extdata/pileup.txt
/usr/lib/R/library/Rsamtools/extdata/querybins.bam
/usr/lib/R/library/Rsamtools/extdata/querybins.bam.bai
/usr/lib/R/library/Rsamtools/extdata/querybins.sam
/usr/lib/R/library/Rsamtools/extdata/revbins.bam
/usr/lib/R/library/Rsamtools/extdata/revbins.bam.bai
/usr/lib/R/library/Rsamtools/extdata/revbins.sam
/usr/lib/R/library/Rsamtools/extdata/samtools-github.txt
/usr/lib/R/library/Rsamtools/extdata/slxMaq09_urls.txt
/usr/lib/R/library/Rsamtools/extdata/tagfilter.bam
/usr/lib/R/library/Rsamtools/extdata/tagfilter.bam.bai
/usr/lib/R/library/Rsamtools/extdata/tagfilter.sam
/usr/lib/R/library/Rsamtools/extdata/tiny.bam
/usr/lib/R/library/Rsamtools/extdata/tiny.bam.bai
/usr/lib/R/library/Rsamtools/extdata/tiny.sam
/usr/lib/R/library/Rsamtools/extdata/tophat/README
/usr/lib/R/library/Rsamtools/extdata/tophat/accepted_hits.sam
/usr/lib/R/library/Rsamtools/extdata/tophat/coverage.wig
/usr/lib/R/library/Rsamtools/extdata/tophat/junctions.bed
/usr/lib/R/library/Rsamtools/help/AnIndex
/usr/lib/R/library/Rsamtools/help/Rsamtools.rdb
/usr/lib/R/library/Rsamtools/help/Rsamtools.rdx
/usr/lib/R/library/Rsamtools/help/aliases.rds
/usr/lib/R/library/Rsamtools/help/paths.rds
/usr/lib/R/library/Rsamtools/html/00Index.html
/usr/lib/R/library/Rsamtools/html/ApplyPileupsParam-class.html
/usr/lib/R/library/Rsamtools/html/BamFile-class.html
/usr/lib/R/library/Rsamtools/html/BamViews-class.html
/usr/lib/R/library/Rsamtools/html/BcfFile-class.html
/usr/lib/R/library/Rsamtools/html/FaFile-class.html
/usr/lib/R/library/Rsamtools/html/PileupFiles-class.html
/usr/lib/R/library/Rsamtools/html/R.css
/usr/lib/R/library/Rsamtools/html/Rsamtools-package.html
/usr/lib/R/library/Rsamtools/html/RsamtoolsFile-class.html
/usr/lib/R/library/Rsamtools/html/RsamtoolsFileList-class.html
/usr/lib/R/library/Rsamtools/html/ScanBamParam-class.html
/usr/lib/R/library/Rsamtools/html/ScanBcfParam-class.html
/usr/lib/R/library/Rsamtools/html/TabixFile-class.html
/usr/lib/R/library/Rsamtools/html/applyPileups.html
/usr/lib/R/library/Rsamtools/html/defunct.html
/usr/lib/R/library/Rsamtools/html/deprecated.html
/usr/lib/R/library/Rsamtools/html/headerTabix.html
/usr/lib/R/library/Rsamtools/html/indexTabix.html
/usr/lib/R/library/Rsamtools/html/pileup.html
/usr/lib/R/library/Rsamtools/html/quickBamFlagSummary.html
/usr/lib/R/library/Rsamtools/html/readPileup.html
/usr/lib/R/library/Rsamtools/html/scanBam.html
/usr/lib/R/library/Rsamtools/html/scanBcf.html
/usr/lib/R/library/Rsamtools/html/scanFa.html
/usr/lib/R/library/Rsamtools/html/scanTabix.html
/usr/lib/R/library/Rsamtools/html/seqnamesTabix.html
/usr/lib/R/library/Rsamtools/html/testPairedEndBam.html
/usr/lib/R/library/Rsamtools/html/zip.html
/usr/lib/R/library/Rsamtools/libs/Rsamtools.so
/usr/lib/R/library/Rsamtools/scripts/BamViews-1000g.R
/usr/lib/R/library/Rsamtools/scripts/features.R
/usr/lib/R/library/Rsamtools/scripts/remote_test.R
/usr/lib/R/library/Rsamtools/scripts/update-samtools.sh
/usr/lib/R/library/Rsamtools/unitTests/test_BamFile.R
/usr/lib/R/library/Rsamtools/unitTests/test_BamViews.R
/usr/lib/R/library/Rsamtools/unitTests/test_BcfFile.R
/usr/lib/R/library/Rsamtools/unitTests/test_FaFile.R
/usr/lib/R/library/Rsamtools/unitTests/test_RsamtoolsFile.R
/usr/lib/R/library/Rsamtools/unitTests/test_TabixFile.R
/usr/lib/R/library/Rsamtools/unitTests/test_applyPileups.R
/usr/lib/R/library/Rsamtools/unitTests/test_asBam.R
/usr/lib/R/library/Rsamtools/unitTests/test_bam.R
/usr/lib/R/library/Rsamtools/unitTests/test_bam_count.R
/usr/lib/R/library/Rsamtools/unitTests/test_bam_header.R
/usr/lib/R/library/Rsamtools/unitTests/test_compression.R
/usr/lib/R/library/Rsamtools/unitTests/test_mapqfilter.R
/usr/lib/R/library/Rsamtools/unitTests/test_phred2ASCIIOffset.R
/usr/lib/R/library/Rsamtools/unitTests/test_pileup_nowhich.R
/usr/lib/R/library/Rsamtools/unitTests/test_pileup_querybins.R
/usr/lib/R/library/Rsamtools/unitTests/test_pileup_revbins.R
/usr/lib/R/library/Rsamtools/unitTests/test_pileup_single_range.R
/usr/lib/R/library/Rsamtools/unitTests/test_readPileup.R
/usr/lib/R/library/Rsamtools/unitTests/test_scanBamFlag.R
/usr/lib/R/library/Rsamtools/unitTests/test_sortBam_test.R
/usr/lib/R/library/Rsamtools/unitTests/test_tagfilter.R
/usr/lib/R/library/Rsamtools/unitTests/test_testPairedEndBam.R
/usr/lib/R/library/Rsamtools/unitTests/test_utilities.R
/usr/lib/R/library/Rsamtools/unitTests/cases/ex1.sam.gz
/usr/lib/R/library/Rsamtools/unitTests/cases/ex1_noindex.bam
/usr/lib/R/library/Rsamtools/unitTests/cases/ex1_shuf1000.bam
/usr/lib/R/library/Rsamtools/unitTests/cases/ex1_shuf1000.bam.bai
/usr/lib/R/library/Rsamtools/unitTests/cases/ex1_unsort.bam
/usr/lib/R/library/Rsamtools/unitTests/cases/ex1_zero_index.bam.bai
/usr/lib/R/library/Rsamtools/unitTests/cases/no_SAMPLE_header.vcf
/usr/lib/R/library/Rsamtools/unitTests/cases/no_header_line.vcf
/usr/lib/R/library/Rsamtools/unitTests/cases/pileup-no-stars.txt
/usr/lib/R/library/Rsamtools/unitTests/cases/plp_refskip.bam
/usr/lib/R/library/Rsamtools/unitTests/cases/plp_refskip.bam.bai

Changelog

2018-05-17 - Tom Callaway <spot@fedoraproject.org> - 1.32.0-1
- update to 1.32.0
2018-03-23 - Tom Callaway <spot@fedoraproject.org> - 1.30.0-1
- update to 1.30.0
2018-02-07 - Fedora Release Engineering <releng@fedoraproject.org> - 1.28.0-4
- Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild
2017-08-02 - Fedora Release Engineering <releng@fedoraproject.org> - 1.28.0-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Binutils_Mass_Rebuild
2017-07-26 - Fedora Release Engineering <releng@fedoraproject.org> - 1.28.0-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild
2017-05-31 - Tom Callaway <spot@fedoraproject.org> - 1.28.0-1
- update to 1.28.0
2017-02-10 - Fedora Release Engineering <releng@fedoraproject.org> - 1.20.2-4
- Rebuilt for https://fedoraproject.org/wiki/Fedora_26_Mass_Rebuild
2016-02-03 - Fedora Release Engineering <releng@fedoraproject.org> - 1.20.2-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild
2015-06-16 - Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.20.2-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild
2015-05-29 - Tom Callaway <spot@fedoraproject.org> - 1.20.2-1
- update to 1.20.2
- fix DESCRIPTION to not be doc
- add -static provide (bz 967213)

See Also

Package Description
R-Rsamtools-devel-1.32.0-1.fc28.i686.rpm Development files for R-Rsamtools
R-Rsolid-0.9.31-24.fc28.i686.rpm Quantile normalization and base calling for second generation sequencing data
R-Rsolid-devel-0.9.31-24.fc28.i686.rpm Development files for R-Rsolid
R-S4Vectors-0.18.2-1.fc28.i686.rpm S4 implementation of vectors and lists
R-S4Vectors-devel-0.18.2-1.fc28.i686.rpm Development files for R-S4Vectors
R-SEDML-0.4.3-10.fc28.i686.rpm R library that fully supports SED-ML for SBML
R-SummarizedExperiment-1.10.1-1.fc28.noarch.rpm SummarizedExperiment container
R-TH-data-1.0.9-1.fc28.noarch.rpm Data for other R packages
R-V8-1.5-7.fc28.i686.rpm Embedded JavaScript Engine for R
R-XML-3.98.1.11-1.fc28.i686.rpm Tools for parsing and generating xml within r and s-plus
R-XVector-0.20.0-1.fc28.i686.rpm Representation and manipulation of external sequences
R-XVector-devel-0.20.0-1.fc28.i686.rpm Development files for R-XVector
R-acepack-1.4.1-7.fc28.i686.rpm ACE and AVAS methods for choosing regression transformations
R-affy-1.58.0-1.fc28.i686.rpm Methods for Affymetrix Oligonucleotide Arrays
R-affydata-1.28.0-1.fc28.noarch.rpm Affymetrix data for demonstration purpose
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