R-ape-5.2-1.fc28.i686.rpm


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Description

R-ape - Analyses of Phylogenetics and Evolution

Property Value
Distribution Fedora 28
Repository Fedora Updates i386
Package name R-ape
Package version 5.2
Package release 1.fc28
Package architecture i686
Package type rpm
Installed size 3.05 MB
Download size 2.24 MB
Official Mirror download-ib01.fedoraproject.org
Functions for reading, writing, plotting, and manipulating phylogenetic
trees, analyses of comparative data in a phylogenetic framework, ancestral
character analyses, analyses of diversification and macroevolution,
computing distances from DNA sequences, reading and writing nucleotide
sequences as well as importing from BioConductor, and several tools such
as Mantel's test, generalized skyline plots, graphical exploration of
phylogenetic data (alex, trex, kronoviz), estimation of absolute
evolutionary rates and clock-like trees using mean path lengths and
penalized likelihood, dating trees with non-contemporaneous sequences,
translating DNA into AA sequences, and assessing sequence alignments.
Phylogeny estimation can be done with the NJ, BIONJ, ME, MVR, SDM, and
triangle methods, and several methods handling incomplete distance
matrices (NJ*, BIONJ*, MVR*, and the corresponding triangle method). Some
functions call external applications (PhyML, Clustal, T-Coffee, Muscle)
whose results are returned into R.

Alternatives

Package Version Architecture Repository
R-ape-5.2-1.fc28.x86_64.rpm 5.2 x86_64 Fedora Updates
R-ape-5.0-1.fc28.x86_64.rpm 5.0 x86_64 Fedora
R-ape-5.0-1.fc28.i686.rpm 5.0 i686 Fedora
R-ape - - -

Requires

Name Value
R parallel
R stats
R tools
R utils
R graphics
R lattice
R methods
R nlme
R-Rcpp >= 0.12.0
libR.so -
libRblas.so -
libRlapack.so -
libc.so.6(GLIBC_2.4) -
libgcc_s.so.1 -
libgcc_s.so.1(GCC_3.0) -
libgcc_s.so.1(GCC_3.3.1) -
libgfortran.so.5 -
libm.so.6 -
libm.so.6(GLIBC_2.0) -
libquadmath.so.0 -
libstdc++.so.6 -
libstdc++.so.6(CXXABI_1.3) -
libstdc++.so.6(CXXABI_1.3.9) -
libstdc++.so.6(GLIBCXX_3.4) -
libstdc++.so.6(GLIBCXX_3.4.11) -
libstdc++.so.6(GLIBCXX_3.4.21) -
libstdc++.so.6(GLIBCXX_3.4.9) -
rtld(GNU_HASH) -

Provides

Name Value
R-ape = 5.2-1.fc28
R-ape(x86-32) = 5.2-1.fc28

Download

Type URL
Binary Package R-ape-5.2-1.fc28.i686.rpm
Source Package R-ape-5.2-1.fc28.src.rpm

Install Howto

Install R-ape rpm package:

# dnf install R-ape

Files

Path
/usr/lib/.build-id/
/usr/lib/.build-id/8a/9b231b0d93f0a360140efe5308c8441f08e57e
/usr/lib/R/library/ape/CITATION
/usr/lib/R/library/ape/DESCRIPTION
/usr/lib/R/library/ape/INDEX
/usr/lib/R/library/ape/NAMESPACE
/usr/lib/R/library/ape/NEWS
/usr/lib/R/library/ape/Meta/Rd.rds
/usr/lib/R/library/ape/Meta/data.rds
/usr/lib/R/library/ape/Meta/features.rds
/usr/lib/R/library/ape/Meta/hsearch.rds
/usr/lib/R/library/ape/Meta/links.rds
/usr/lib/R/library/ape/Meta/nsInfo.rds
/usr/lib/R/library/ape/Meta/package.rds
/usr/lib/R/library/ape/Meta/vignette.rds
/usr/lib/R/library/ape/R/ape
/usr/lib/R/library/ape/R/ape.rdb
/usr/lib/R/library/ape/R/ape.rdx
/usr/lib/R/library/ape/data/HP.links.rda
/usr/lib/R/library/ape/data/bird.families.rda
/usr/lib/R/library/ape/data/bird.orders.rda
/usr/lib/R/library/ape/data/carnivora.csv.gz
/usr/lib/R/library/ape/data/chiroptera.rda
/usr/lib/R/library/ape/data/cynipids.rda
/usr/lib/R/library/ape/data/gopher.D.rda
/usr/lib/R/library/ape/data/hivtree.newick.rda
/usr/lib/R/library/ape/data/hivtree.table.txt.gz
/usr/lib/R/library/ape/data/lice.D.rda
/usr/lib/R/library/ape/data/lmorigin.ex1.rda
/usr/lib/R/library/ape/data/lmorigin.ex2.rda
/usr/lib/R/library/ape/data/mat3.RData
/usr/lib/R/library/ape/data/mat5M3ID.RData
/usr/lib/R/library/ape/data/mat5Mrand.RData
/usr/lib/R/library/ape/data/woodmouse.rda
/usr/lib/R/library/ape/doc/MoranI.R
/usr/lib/R/library/ape/doc/MoranI.Rnw
/usr/lib/R/library/ape/doc/MoranI.pdf
/usr/lib/R/library/ape/doc/index.html
/usr/lib/R/library/ape/help/AnIndex
/usr/lib/R/library/ape/help/aliases.rds
/usr/lib/R/library/ape/help/ape.rdb
/usr/lib/R/library/ape/help/ape.rdx
/usr/lib/R/library/ape/help/paths.rds
/usr/lib/R/library/ape/html/00Index.html
/usr/lib/R/library/ape/html/AAbin.html
/usr/lib/R/library/ape/html/CADM.global.html
/usr/lib/R/library/ape/html/DNAbin.html
/usr/lib/R/library/ape/html/DNAbin2indel.html
/usr/lib/R/library/ape/html/Initialize.corPhyl.html
/usr/lib/R/library/ape/html/LTT.html
/usr/lib/R/library/ape/html/MPR.html
/usr/lib/R/library/ape/html/MoranI.html
/usr/lib/R/library/ape/html/R.css
/usr/lib/R/library/ape/html/SDM.html
/usr/lib/R/library/ape/html/ace.html
/usr/lib/R/library/ape/html/add.scale.bar.html
/usr/lib/R/library/ape/html/additive.html
/usr/lib/R/library/ape/html/alex.html
/usr/lib/R/library/ape/html/all.equal.DNAbin.html
/usr/lib/R/library/ape/html/all.equal.phylo.html
/usr/lib/R/library/ape/html/alview.html
/usr/lib/R/library/ape/html/ape-internal.html
/usr/lib/R/library/ape/html/ape-package.html
/usr/lib/R/library/ape/html/apetools.html
/usr/lib/R/library/ape/html/as.alignment.html
/usr/lib/R/library/ape/html/as.bitsplits.html
/usr/lib/R/library/ape/html/as.matching.html
/usr/lib/R/library/ape/html/as.phylo.formula.html
/usr/lib/R/library/ape/html/as.phylo.html
/usr/lib/R/library/ape/html/axisPhylo.html
/usr/lib/R/library/ape/html/balance.html
/usr/lib/R/library/ape/html/base.freq.html
/usr/lib/R/library/ape/html/bd.ext.html
/usr/lib/R/library/ape/html/bd.time.html
/usr/lib/R/library/ape/html/binaryPGLMM.html
/usr/lib/R/library/ape/html/bind.tree.html
/usr/lib/R/library/ape/html/bionj.html
/usr/lib/R/library/ape/html/bird.families.html
/usr/lib/R/library/ape/html/bird.orders.html
/usr/lib/R/library/ape/html/birthdeath.html
/usr/lib/R/library/ape/html/boot.phylo.html
/usr/lib/R/library/ape/html/branching.times.html
/usr/lib/R/library/ape/html/c.phylo.html
/usr/lib/R/library/ape/html/carnivora.html
/usr/lib/R/library/ape/html/checkAlignment.html
/usr/lib/R/library/ape/html/checkValidPhylo.html
/usr/lib/R/library/ape/html/cherry.html
/usr/lib/R/library/ape/html/chiroptera.html
/usr/lib/R/library/ape/html/chronoMPL.html
/usr/lib/R/library/ape/html/chronopl.html
/usr/lib/R/library/ape/html/chronos.html
/usr/lib/R/library/ape/html/clustal.html
/usr/lib/R/library/ape/html/coalescent.intervals.html
/usr/lib/R/library/ape/html/collapse.singles.html
/usr/lib/R/library/ape/html/collapsed.intervals.html
/usr/lib/R/library/ape/html/compar.cheverud.html
/usr/lib/R/library/ape/html/compar.gee.html
/usr/lib/R/library/ape/html/compar.lynch.html
/usr/lib/R/library/ape/html/compar.ou.html
/usr/lib/R/library/ape/html/comparePhylo.html
/usr/lib/R/library/ape/html/compute.brlen.html
/usr/lib/R/library/ape/html/compute.brtime.html
/usr/lib/R/library/ape/html/consensus.html
/usr/lib/R/library/ape/html/cophenetic.phylo.html
/usr/lib/R/library/ape/html/cophyloplot.html
/usr/lib/R/library/ape/html/corBlomberg.html
/usr/lib/R/library/ape/html/corBrownian.html
/usr/lib/R/library/ape/html/corClasses.html
/usr/lib/R/library/ape/html/corGrafen.html
/usr/lib/R/library/ape/html/corMartins.html
/usr/lib/R/library/ape/html/corPagel.html
/usr/lib/R/library/ape/html/corphylo.html
/usr/lib/R/library/ape/html/correlogram.formula.html
/usr/lib/R/library/ape/html/cynipids.html
/usr/lib/R/library/ape/html/dbd.html
/usr/lib/R/library/ape/html/def.html
/usr/lib/R/library/ape/html/del.gaps.html
/usr/lib/R/library/ape/html/delta.plot.html
/usr/lib/R/library/ape/html/dist.dna.html
/usr/lib/R/library/ape/html/dist.gene.html
/usr/lib/R/library/ape/html/dist.topo.html
/usr/lib/R/library/ape/html/diversi.gof.html
/usr/lib/R/library/ape/html/diversi.time.html
/usr/lib/R/library/ape/html/diversity.contrast.test.html
/usr/lib/R/library/ape/html/drop.tip.html
/usr/lib/R/library/ape/html/edges.html
/usr/lib/R/library/ape/html/evonet.html
/usr/lib/R/library/ape/html/ewLasso.html
/usr/lib/R/library/ape/html/fastme.html
/usr/lib/R/library/ape/html/gammaStat.html
/usr/lib/R/library/ape/html/hivtree.html
/usr/lib/R/library/ape/html/howmanytrees.html
/usr/lib/R/library/ape/html/identify.phylo.html
/usr/lib/R/library/ape/html/image.DNAbin.html
/usr/lib/R/library/ape/html/is.binary.tree.html
/usr/lib/R/library/ape/html/is.compatible.html
/usr/lib/R/library/ape/html/is.monophyletic.html
/usr/lib/R/library/ape/html/is.ultrametric.html
/usr/lib/R/library/ape/html/kronoviz.html
/usr/lib/R/library/ape/html/label2table.html
/usr/lib/R/library/ape/html/ladderize.html
/usr/lib/R/library/ape/html/lmorigin.html
/usr/lib/R/library/ape/html/ltt.plot.html
/usr/lib/R/library/ape/html/makeLabel.html
/usr/lib/R/library/ape/html/makeNodeLabel.html
/usr/lib/R/library/ape/html/mantel.test.html
/usr/lib/R/library/ape/html/mat3.html
/usr/lib/R/library/ape/html/mat5M3ID.html
/usr/lib/R/library/ape/html/mat5Mrand.html
/usr/lib/R/library/ape/html/matexpo.html
/usr/lib/R/library/ape/html/mcconwaysims.test.html
/usr/lib/R/library/ape/html/mcmc.popsize.html
/usr/lib/R/library/ape/html/mixedFontLabel.html
/usr/lib/R/library/ape/html/mrca.html
/usr/lib/R/library/ape/html/mst.html
/usr/lib/R/library/ape/html/multi2di.html
/usr/lib/R/library/ape/html/multiphylo.html
/usr/lib/R/library/ape/html/mvr.html
/usr/lib/R/library/ape/html/nj.html
/usr/lib/R/library/ape/html/njs.html
/usr/lib/R/library/ape/html/node.dating.html
/usr/lib/R/library/ape/html/node.depth.html
/usr/lib/R/library/ape/html/nodelabels.html
/usr/lib/R/library/ape/html/nodepath.html
/usr/lib/R/library/ape/html/parafit.html
/usr/lib/R/library/ape/html/pcoa.html
/usr/lib/R/library/ape/html/phydataplot.html
/usr/lib/R/library/ape/html/phymltest.html
/usr/lib/R/library/ape/html/pic.html
/usr/lib/R/library/ape/html/pic.ortho.html
/usr/lib/R/library/ape/html/plot.correlogram.html
/usr/lib/R/library/ape/html/plot.phylo.html
/usr/lib/R/library/ape/html/plot.phyloExtra.html
/usr/lib/R/library/ape/html/plot.varcomp.html
/usr/lib/R/library/ape/html/plotTreeTime.html
/usr/lib/R/library/ape/html/print.phylo.html
/usr/lib/R/library/ape/html/rDNAbin.html
/usr/lib/R/library/ape/html/rTraitCont.html
/usr/lib/R/library/ape/html/rTraitDisc.html
/usr/lib/R/library/ape/html/rTraitMult.html
/usr/lib/R/library/ape/html/read.GenBank.html
/usr/lib/R/library/ape/html/read.caic.html
/usr/lib/R/library/ape/html/read.dna.html
/usr/lib/R/library/ape/html/read.gff.html
/usr/lib/R/library/ape/html/read.nexus.data.html
/usr/lib/R/library/ape/html/read.nexus.html
/usr/lib/R/library/ape/html/read.tree.html
/usr/lib/R/library/ape/html/reconstruct.html
/usr/lib/R/library/ape/html/reorder.phylo.html
/usr/lib/R/library/ape/html/richness.yule.test.html
/usr/lib/R/library/ape/html/rlineage.html
/usr/lib/R/library/ape/html/root.html
/usr/lib/R/library/ape/html/rotate.html
/usr/lib/R/library/ape/html/rtree.html
/usr/lib/R/library/ape/html/rtt.html
/usr/lib/R/library/ape/html/seg.sites.html
/usr/lib/R/library/ape/html/skyline.html
/usr/lib/R/library/ape/html/skylineplot.html
/usr/lib/R/library/ape/html/slowinskiguyer.test.html
/usr/lib/R/library/ape/html/speciesTree.html
/usr/lib/R/library/ape/html/stree.html
/usr/lib/R/library/ape/html/subtreeplot.html
/usr/lib/R/library/ape/html/subtrees.html
/usr/lib/R/library/ape/html/summary.phylo.html
/usr/lib/R/library/ape/html/trans.html
/usr/lib/R/library/ape/html/treePop.html
/usr/lib/R/library/ape/html/trex.html
/usr/lib/R/library/ape/html/triangMtd.html
/usr/lib/R/library/ape/html/unique.multiPhylo.html
/usr/lib/R/library/ape/html/updateLabel.html
/usr/lib/R/library/ape/html/varCompPhylip.html
/usr/lib/R/library/ape/html/varcomp.html
/usr/lib/R/library/ape/html/vcv.phylo.html
/usr/lib/R/library/ape/html/vcv2phylo.html
/usr/lib/R/library/ape/html/weight.taxo.html
/usr/lib/R/library/ape/html/where.html
/usr/lib/R/library/ape/html/which.edge.html
/usr/lib/R/library/ape/html/woodmouse.html
/usr/lib/R/library/ape/html/write.dna.html
/usr/lib/R/library/ape/html/write.nexus.data.html
/usr/lib/R/library/ape/html/write.nexus.html
/usr/lib/R/library/ape/html/write.tree.html
/usr/lib/R/library/ape/html/yule.cov.html
/usr/lib/R/library/ape/html/yule.html
/usr/lib/R/library/ape/html/yule.time.html
/usr/lib/R/library/ape/html/zoom.html
/usr/lib/R/library/ape/libs/ape.so

Changelog

2019-01-22 - Elliott Sales de Andrade <quantum.analyst@gmail.com> - 5.2-1
- Update to latest version
- Re-enable build checks
- Re-arrange to match latest template
2018-07-12 - Fedora Release Engineering <releng@fedoraproject.org> - 5.1-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_29_Mass_Rebuild
2018-05-16 - Tom Callaway <spot@fedoraproject.org> - 5.1-1
- update to 5.1, rebuild for R 3.5.0
2018-03-23 - Elliott Sales de Andrade <quantum.analyst@gmail.com> - 5.0-1
- initial package for Fedora

See Also

Package Description
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