R-ape-5.2-1.fc28.i686.rpm Fedora 28 Download

Description

R-ape - Analyses of Phylogenetics and Evolution

Property	Value
Distribution	Fedora 28
Repository	Fedora Updates i386
Package name	R-ape
Package version	5.2
Package release	1.fc28
Package architecture	i686
Package type	rpm
Installed size	3.05 MB
Download size	2.24 MB
Official Mirror	download-ib01.fedoraproject.org

Functions for reading, writing, plotting, and manipulating phylogenetic
trees, analyses of comparative data in a phylogenetic framework, ancestral
character analyses, analyses of diversification and macroevolution,
computing distances from DNA sequences, reading and writing nucleotide
sequences as well as importing from BioConductor, and several tools such
as Mantel's test, generalized skyline plots, graphical exploration of
phylogenetic data (alex, trex, kronoviz), estimation of absolute
evolutionary rates and clock-like trees using mean path lengths and
penalized likelihood, dating trees with non-contemporaneous sequences,
translating DNA into AA sequences, and assessing sequence alignments.
Phylogeny estimation can be done with the NJ, BIONJ, ME, MVR, SDM, and
triangle methods, and several methods handling incomplete distance
matrices (NJ*, BIONJ*, MVR*, and the corresponding triangle method). Some
functions call external applications (PhyML, Clustal, T-Coffee, Muscle)
whose results are returned into R.

Alternatives

Package	Version	Architecture	Repository
R-ape-5.2-1.fc28.x86_64.rpm	5.2	x86_64	Fedora Updates
R-ape-5.0-1.fc28.x86_64.rpm	5.0	x86_64	Fedora
R-ape-5.0-1.fc28.i686.rpm	5.0	i686	Fedora
R-ape	-	-	-

Requires

Name	Value
R	parallel
R	stats
R	tools
R	utils
R	graphics
R	lattice
R	methods
R	nlme
R-Rcpp	>= 0.12.0
libR.so	-
libRblas.so	-
libRlapack.so	-
libc.so.6(GLIBC_2.4)	-
libgcc_s.so.1	-
libgcc_s.so.1(GCC_3.0)	-
libgcc_s.so.1(GCC_3.3.1)	-
libgfortran.so.5	-
libm.so.6	-
libm.so.6(GLIBC_2.0)	-
libquadmath.so.0	-
libstdc++.so.6	-
libstdc++.so.6(CXXABI_1.3)	-
libstdc++.so.6(CXXABI_1.3.9)	-
libstdc++.so.6(GLIBCXX_3.4)	-
libstdc++.so.6(GLIBCXX_3.4.11)	-
libstdc++.so.6(GLIBCXX_3.4.21)	-
libstdc++.so.6(GLIBCXX_3.4.9)	-
rtld(GNU_HASH)	-

Provides

Name	Value
R-ape	= 5.2-1.fc28
R-ape(x86-32)	= 5.2-1.fc28

Download

Type	URL
Binary Package	R-ape-5.2-1.fc28.i686.rpm
Source Package	R-ape-5.2-1.fc28.src.rpm

Install Howto

Install R-ape rpm package:

# dnf install R-ape

Files

Path
/usr/lib/.build-id/
/usr/lib/.build-id/8a/9b231b0d93f0a360140efe5308c8441f08e57e
/usr/lib/R/library/ape/CITATION
/usr/lib/R/library/ape/DESCRIPTION
/usr/lib/R/library/ape/INDEX
/usr/lib/R/library/ape/NAMESPACE
/usr/lib/R/library/ape/NEWS
/usr/lib/R/library/ape/Meta/Rd.rds
/usr/lib/R/library/ape/Meta/data.rds
/usr/lib/R/library/ape/Meta/features.rds
/usr/lib/R/library/ape/Meta/hsearch.rds
/usr/lib/R/library/ape/Meta/links.rds
/usr/lib/R/library/ape/Meta/nsInfo.rds
/usr/lib/R/library/ape/Meta/package.rds
/usr/lib/R/library/ape/Meta/vignette.rds
/usr/lib/R/library/ape/R/ape
/usr/lib/R/library/ape/R/ape.rdb
/usr/lib/R/library/ape/R/ape.rdx
/usr/lib/R/library/ape/data/HP.links.rda
/usr/lib/R/library/ape/data/bird.families.rda
/usr/lib/R/library/ape/data/bird.orders.rda
/usr/lib/R/library/ape/data/carnivora.csv.gz
/usr/lib/R/library/ape/data/chiroptera.rda
/usr/lib/R/library/ape/data/cynipids.rda
/usr/lib/R/library/ape/data/gopher.D.rda
/usr/lib/R/library/ape/data/hivtree.newick.rda
/usr/lib/R/library/ape/data/hivtree.table.txt.gz
/usr/lib/R/library/ape/data/lice.D.rda
/usr/lib/R/library/ape/data/lmorigin.ex1.rda
/usr/lib/R/library/ape/data/lmorigin.ex2.rda
/usr/lib/R/library/ape/data/mat3.RData
/usr/lib/R/library/ape/data/mat5M3ID.RData
/usr/lib/R/library/ape/data/mat5Mrand.RData
/usr/lib/R/library/ape/data/woodmouse.rda
/usr/lib/R/library/ape/doc/MoranI.R
/usr/lib/R/library/ape/doc/MoranI.Rnw
/usr/lib/R/library/ape/doc/MoranI.pdf
/usr/lib/R/library/ape/doc/index.html
/usr/lib/R/library/ape/help/AnIndex
/usr/lib/R/library/ape/help/aliases.rds
/usr/lib/R/library/ape/help/ape.rdb
/usr/lib/R/library/ape/help/ape.rdx
/usr/lib/R/library/ape/help/paths.rds
/usr/lib/R/library/ape/html/00Index.html
/usr/lib/R/library/ape/html/AAbin.html
/usr/lib/R/library/ape/html/CADM.global.html
/usr/lib/R/library/ape/html/DNAbin.html
/usr/lib/R/library/ape/html/DNAbin2indel.html
/usr/lib/R/library/ape/html/Initialize.corPhyl.html
/usr/lib/R/library/ape/html/LTT.html
/usr/lib/R/library/ape/html/MPR.html
/usr/lib/R/library/ape/html/MoranI.html
/usr/lib/R/library/ape/html/R.css
/usr/lib/R/library/ape/html/SDM.html
/usr/lib/R/library/ape/html/ace.html
/usr/lib/R/library/ape/html/add.scale.bar.html
/usr/lib/R/library/ape/html/additive.html
/usr/lib/R/library/ape/html/alex.html
/usr/lib/R/library/ape/html/all.equal.DNAbin.html
/usr/lib/R/library/ape/html/all.equal.phylo.html
/usr/lib/R/library/ape/html/alview.html
/usr/lib/R/library/ape/html/ape-internal.html
/usr/lib/R/library/ape/html/ape-package.html
/usr/lib/R/library/ape/html/apetools.html
/usr/lib/R/library/ape/html/as.alignment.html
/usr/lib/R/library/ape/html/as.bitsplits.html
/usr/lib/R/library/ape/html/as.matching.html
/usr/lib/R/library/ape/html/as.phylo.formula.html
/usr/lib/R/library/ape/html/as.phylo.html
/usr/lib/R/library/ape/html/axisPhylo.html
/usr/lib/R/library/ape/html/balance.html
/usr/lib/R/library/ape/html/base.freq.html
/usr/lib/R/library/ape/html/bd.ext.html
/usr/lib/R/library/ape/html/bd.time.html
/usr/lib/R/library/ape/html/binaryPGLMM.html
/usr/lib/R/library/ape/html/bind.tree.html
/usr/lib/R/library/ape/html/bionj.html
/usr/lib/R/library/ape/html/bird.families.html
/usr/lib/R/library/ape/html/bird.orders.html
/usr/lib/R/library/ape/html/birthdeath.html
/usr/lib/R/library/ape/html/boot.phylo.html
/usr/lib/R/library/ape/html/branching.times.html
/usr/lib/R/library/ape/html/c.phylo.html
/usr/lib/R/library/ape/html/carnivora.html
/usr/lib/R/library/ape/html/checkAlignment.html
/usr/lib/R/library/ape/html/checkValidPhylo.html
/usr/lib/R/library/ape/html/cherry.html
/usr/lib/R/library/ape/html/chiroptera.html
/usr/lib/R/library/ape/html/chronoMPL.html
/usr/lib/R/library/ape/html/chronopl.html
/usr/lib/R/library/ape/html/chronos.html
/usr/lib/R/library/ape/html/clustal.html
/usr/lib/R/library/ape/html/coalescent.intervals.html
/usr/lib/R/library/ape/html/collapse.singles.html
/usr/lib/R/library/ape/html/collapsed.intervals.html
/usr/lib/R/library/ape/html/compar.cheverud.html
/usr/lib/R/library/ape/html/compar.gee.html
/usr/lib/R/library/ape/html/compar.lynch.html
/usr/lib/R/library/ape/html/compar.ou.html
/usr/lib/R/library/ape/html/comparePhylo.html
/usr/lib/R/library/ape/html/compute.brlen.html
/usr/lib/R/library/ape/html/compute.brtime.html
/usr/lib/R/library/ape/html/consensus.html
/usr/lib/R/library/ape/html/cophenetic.phylo.html
/usr/lib/R/library/ape/html/cophyloplot.html
/usr/lib/R/library/ape/html/corBlomberg.html
/usr/lib/R/library/ape/html/corBrownian.html
/usr/lib/R/library/ape/html/corClasses.html
/usr/lib/R/library/ape/html/corGrafen.html
/usr/lib/R/library/ape/html/corMartins.html
/usr/lib/R/library/ape/html/corPagel.html
/usr/lib/R/library/ape/html/corphylo.html
/usr/lib/R/library/ape/html/correlogram.formula.html
/usr/lib/R/library/ape/html/cynipids.html
/usr/lib/R/library/ape/html/dbd.html
/usr/lib/R/library/ape/html/def.html
/usr/lib/R/library/ape/html/del.gaps.html
/usr/lib/R/library/ape/html/delta.plot.html
/usr/lib/R/library/ape/html/dist.dna.html
/usr/lib/R/library/ape/html/dist.gene.html
/usr/lib/R/library/ape/html/dist.topo.html
/usr/lib/R/library/ape/html/diversi.gof.html
/usr/lib/R/library/ape/html/diversi.time.html
/usr/lib/R/library/ape/html/diversity.contrast.test.html
/usr/lib/R/library/ape/html/drop.tip.html
/usr/lib/R/library/ape/html/edges.html
/usr/lib/R/library/ape/html/evonet.html
/usr/lib/R/library/ape/html/ewLasso.html
/usr/lib/R/library/ape/html/fastme.html
/usr/lib/R/library/ape/html/gammaStat.html
/usr/lib/R/library/ape/html/hivtree.html
/usr/lib/R/library/ape/html/howmanytrees.html
/usr/lib/R/library/ape/html/identify.phylo.html
/usr/lib/R/library/ape/html/image.DNAbin.html
/usr/lib/R/library/ape/html/is.binary.tree.html
/usr/lib/R/library/ape/html/is.compatible.html
/usr/lib/R/library/ape/html/is.monophyletic.html
/usr/lib/R/library/ape/html/is.ultrametric.html
/usr/lib/R/library/ape/html/kronoviz.html
/usr/lib/R/library/ape/html/label2table.html
/usr/lib/R/library/ape/html/ladderize.html
/usr/lib/R/library/ape/html/lmorigin.html
/usr/lib/R/library/ape/html/ltt.plot.html
/usr/lib/R/library/ape/html/makeLabel.html
/usr/lib/R/library/ape/html/makeNodeLabel.html
/usr/lib/R/library/ape/html/mantel.test.html
/usr/lib/R/library/ape/html/mat3.html
/usr/lib/R/library/ape/html/mat5M3ID.html
/usr/lib/R/library/ape/html/mat5Mrand.html
/usr/lib/R/library/ape/html/matexpo.html
/usr/lib/R/library/ape/html/mcconwaysims.test.html
/usr/lib/R/library/ape/html/mcmc.popsize.html
/usr/lib/R/library/ape/html/mixedFontLabel.html
/usr/lib/R/library/ape/html/mrca.html
/usr/lib/R/library/ape/html/mst.html
/usr/lib/R/library/ape/html/multi2di.html
/usr/lib/R/library/ape/html/multiphylo.html
/usr/lib/R/library/ape/html/mvr.html
/usr/lib/R/library/ape/html/nj.html
/usr/lib/R/library/ape/html/njs.html
/usr/lib/R/library/ape/html/node.dating.html
/usr/lib/R/library/ape/html/node.depth.html
/usr/lib/R/library/ape/html/nodelabels.html
/usr/lib/R/library/ape/html/nodepath.html
/usr/lib/R/library/ape/html/parafit.html
/usr/lib/R/library/ape/html/pcoa.html
/usr/lib/R/library/ape/html/phydataplot.html
/usr/lib/R/library/ape/html/phymltest.html
/usr/lib/R/library/ape/html/pic.html
/usr/lib/R/library/ape/html/pic.ortho.html
/usr/lib/R/library/ape/html/plot.correlogram.html
/usr/lib/R/library/ape/html/plot.phylo.html
/usr/lib/R/library/ape/html/plot.phyloExtra.html
/usr/lib/R/library/ape/html/plot.varcomp.html
/usr/lib/R/library/ape/html/plotTreeTime.html
/usr/lib/R/library/ape/html/print.phylo.html
/usr/lib/R/library/ape/html/rDNAbin.html
/usr/lib/R/library/ape/html/rTraitCont.html
/usr/lib/R/library/ape/html/rTraitDisc.html
/usr/lib/R/library/ape/html/rTraitMult.html
/usr/lib/R/library/ape/html/read.GenBank.html
/usr/lib/R/library/ape/html/read.caic.html
/usr/lib/R/library/ape/html/read.dna.html
/usr/lib/R/library/ape/html/read.gff.html
/usr/lib/R/library/ape/html/read.nexus.data.html
/usr/lib/R/library/ape/html/read.nexus.html
/usr/lib/R/library/ape/html/read.tree.html
/usr/lib/R/library/ape/html/reconstruct.html
/usr/lib/R/library/ape/html/reorder.phylo.html
/usr/lib/R/library/ape/html/richness.yule.test.html
/usr/lib/R/library/ape/html/rlineage.html
/usr/lib/R/library/ape/html/root.html
/usr/lib/R/library/ape/html/rotate.html
/usr/lib/R/library/ape/html/rtree.html
/usr/lib/R/library/ape/html/rtt.html
/usr/lib/R/library/ape/html/seg.sites.html
/usr/lib/R/library/ape/html/skyline.html
/usr/lib/R/library/ape/html/skylineplot.html
/usr/lib/R/library/ape/html/slowinskiguyer.test.html
/usr/lib/R/library/ape/html/speciesTree.html
/usr/lib/R/library/ape/html/stree.html
/usr/lib/R/library/ape/html/subtreeplot.html
/usr/lib/R/library/ape/html/subtrees.html
/usr/lib/R/library/ape/html/summary.phylo.html
/usr/lib/R/library/ape/html/trans.html
/usr/lib/R/library/ape/html/treePop.html
/usr/lib/R/library/ape/html/trex.html
/usr/lib/R/library/ape/html/triangMtd.html
/usr/lib/R/library/ape/html/unique.multiPhylo.html
/usr/lib/R/library/ape/html/updateLabel.html
/usr/lib/R/library/ape/html/varCompPhylip.html
/usr/lib/R/library/ape/html/varcomp.html
/usr/lib/R/library/ape/html/vcv.phylo.html
/usr/lib/R/library/ape/html/vcv2phylo.html
/usr/lib/R/library/ape/html/weight.taxo.html
/usr/lib/R/library/ape/html/where.html
/usr/lib/R/library/ape/html/which.edge.html
/usr/lib/R/library/ape/html/woodmouse.html
/usr/lib/R/library/ape/html/write.dna.html
/usr/lib/R/library/ape/html/write.nexus.data.html
/usr/lib/R/library/ape/html/write.nexus.html
/usr/lib/R/library/ape/html/write.tree.html
/usr/lib/R/library/ape/html/yule.cov.html
/usr/lib/R/library/ape/html/yule.html
/usr/lib/R/library/ape/html/yule.time.html
/usr/lib/R/library/ape/html/zoom.html
/usr/lib/R/library/ape/libs/ape.so

Changelog

2019-01-22 - Elliott Sales de Andrade <quantum.analyst@gmail.com> - 5.2-1
- Update to latest version
- Re-enable build checks
- Re-arrange to match latest template

2018-07-12 - Fedora Release Engineering <releng@fedoraproject.org> - 5.1-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_29_Mass_Rebuild

2018-05-16 - Tom Callaway <spot@fedoraproject.org> - 5.1-1
- update to 5.1, rebuild for R 3.5.0

2018-03-23 - Elliott Sales de Andrade <quantum.analyst@gmail.com> - 5.0-1
- initial package for Fedora

Package	Description
R-argon2-0.2.0-2.fc28.i686.rpm	Secure Password Hashing
R-ascii-2.1-1.fc28.noarch.rpm	Export R objects to several markup languages
R-backports-1.1.2-3.fc28.i686.rpm	Reimplementations of Functions Introduced Since R-3.0.0
R-base64enc-0.1.3-3.fc28.i686.rpm	Tools for base64 encoding
R-biglm-0.9.1-13.fc28.i686.rpm	Bounded memory linear and generalized linear models
R-bindrcpp-0.2.2-2.fc28.i686.rpm	An 'Rcpp' Interface to Active Bindings
R-bindrcpp-devel-0.2.2-2.fc28.i686.rpm	Development files for R-bindrcpp
R-bit-1.1.14-1.fc28.i686.rpm	A class for vectors of 1-bit booleans
R-bit64-0.9.7-3.fc28.i686.rpm	A S3 Class for Vectors of 64bit Integers
R-bitops-1.0.6-9.fc28.i686.rpm	Functions for Bitwise operations
R-blob-1.1.1-2.fc28.noarch.rpm	A Simple S3 Class for Representing Vectors of Binary Data ('BLOBS')
R-caTools-1.17.1-8.fc28.i686.rpm	Tools: moving window statistics, gif, base64, roc auc...
R-callr-2.0.4-1.fc28.noarch.rpm	Call R from R
R-car-2.0.22-1.fc28.noarch.rpm	Companion to Applied Regression package for R
R-cellranger-1.1.0-1.fc28.noarch.rpm	Translate Spreadsheet Cell Ranges to Rows and Columns

Description

Alternatives

Requires

Provides

Download

Install Howto

Files

Changelog

See Also