mmseq-1.0.8a-27.fc28.i686.rpm


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Description

mmseq - Haplotype and isoform specific expression estimation for RNA-seq

Property Value
Distribution Fedora 28
Repository Fedora Updates i386
Package name mmseq
Package version 1.0.8a
Package release 27.fc28
Package architecture i686
Package type rpm
Installed size 1.76 MB
Download size 713.93 KB
Official Mirror download-ib01.fedoraproject.org
Software for fast, scalable haplotype and isoform expression
estimation using multi-mapping RNA-seq reads.  Example scripts are included.

Alternatives

Package Version Architecture Repository
mmseq-1.0.8a-27.fc28.x86_64.rpm 1.0.8a x86_64 Fedora Updates
mmseq-1.0.8a-24.fc28.x86_64.rpm 1.0.8a x86_64 Fedora
mmseq-1.0.8a-24.fc28.i686.rpm 1.0.8a i686 Fedora
mmseq - - -

Requires

Name Value
/bin/bash -
/usr/bin/perl -
/usr/bin/ruby -
libarmadillo.so.9 -
libbam.so.1 -
libblas.so.3 -
libboost_iostreams.so.1.66.0 -
libboost_regex.so.1.66.0 -
libc.so.6(GLIBC_2.4) -
libgcc_s.so.1 -
libgcc_s.so.1(GCC_3.0) -
libgfortran.so.5 -
libgomp.so.1 -
libgomp.so.1(GOMP_1.0) -
libgomp.so.1(GOMP_4.0) -
libgomp.so.1(OMP_1.0) -
libgsl.so.23 -
libgslcblas.so.0 -
liblapack.so.3 -
libm.so.6 -
libm.so.6(GLIBC_2.0) -
libm.so.6(GLIBC_2.1) -
libstdc++.so.6 -
libstdc++.so.6(CXXABI_1.3) -
libstdc++.so.6(CXXABI_1.3.8) -
libstdc++.so.6(CXXABI_1.3.9) -
libstdc++.so.6(GLIBCXX_3.4) -
libstdc++.so.6(GLIBCXX_3.4.11) -
libstdc++.so.6(GLIBCXX_3.4.15) -
libstdc++.so.6(GLIBCXX_3.4.20) -
libstdc++.so.6(GLIBCXX_3.4.21) -
libstdc++.so.6(GLIBCXX_3.4.9) -
perl(strict) -
perl-interpreter -
rtld(GNU_HASH) -
ruby -
samtools -

Provides

Name Value
mmseq = 1.0.8a-27.fc28
mmseq(x86-32) = 1.0.8a-27.fc28

Download

Type URL
Binary Package mmseq-1.0.8a-27.fc28.i686.rpm
Source Package mmseq-1.0.8a-27.fc28.src.rpm

Install Howto

Install mmseq rpm package:

# dnf install mmseq

Files

Path
/usr/bin/bam2hits
/usr/bin/ensembl_gtf_to_gff.pl
/usr/bin/extract_transcripts
/usr/bin/fastagrep.sh
/usr/bin/filterGTF.rb
/usr/bin/haploref.rb
/usr/bin/hitstools
/usr/bin/mmcollapse
/usr/bin/mmdiff
/usr/bin/mmseq
/usr/bin/mouse_strain_transcriptome.sh
/usr/bin/offsetGTF
/usr/bin/t2g_hits
/usr/bin/testregexp.rb
/usr/bin/usage.sh
/usr/lib/.build-id/
/usr/lib/.build-id/09/d5027675d0b76186ef9609d3e467b4a63f022c
/usr/lib/.build-id/09/fc68b3b6cf2e3cc0fdab497350ef4a90d0cb42
/usr/lib/.build-id/33/5bf073125b14164e4f25621560e8f5a4a4d191
/usr/lib/.build-id/36/3da6275feecc995cfbbe065e68d8f33bd8c6a5
/usr/lib/.build-id/68/d5a45f8137d20e9991e2aafc5728ffccbbf996
/usr/lib/.build-id/bb/d19e45035b0c733c00b6acdb56499f7e27e3d6
/usr/lib/.build-id/cc/511cb77967f6bd2dd4400c350758935898e65e
/usr/lib/.build-id/d0/26090037f4a6b1649ee58cb3c065c14938bf4b
/usr/share/doc/mmseq/COPYING
/usr/share/doc/mmseq/README.md
/usr/share/doc/mmseq/doc/332.mat
/usr/share/doc/mmseq/doc/countsDE.md
/usr/share/doc/mmseq/doc/dod2.mat
/usr/share/doc/mmseq/doc/mmseq-collage.png

Changelog

2018-08-17 - José Abílio Matos <jamatos@fc.up.pt> - 1.0.8a-27
- rebuild for armadillo soname bump
2018-07-13 - Fedora Release Engineering <releng@fedoraproject.org> - 1.0.8a-26
- Rebuilt for https://fedoraproject.org/wiki/Fedora_29_Mass_Rebuild
2018-02-08 - Fedora Release Engineering <releng@fedoraproject.org> - 1.0.8a-25
- Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild
2018-01-23 - Jonathan Wakely <jwakely@redhat.com> - 1.0.8a-24
- Rebuilt for Boost 1.66
2017-09-22 - Adam Huffman <bloch@verdurin.com> - 1.0.8a-23
- rebuilt for armadillo
2017-08-03 - Fedora Release Engineering <releng@fedoraproject.org> - 1.0.8a-22
- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Binutils_Mass_Rebuild
2017-07-26 - Fedora Release Engineering <releng@fedoraproject.org> - 1.0.8a-21
- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild
2017-07-24 - Björn Esser <besser82@fedoraproject.org> - 1.0.8a-20
- Rebuilt for Boost 1.64
2017-07-13 - Petr Pisar <ppisar@redhat.com> - 1.0.8a-19
- perl dependency renamed to perl-interpreter
<https://fedoraproject.org/wiki/Changes/perl_Package_to_Install_Core_Modules>
2017-05-15 - Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.0.8a-18
- Rebuilt for https://fedoraproject.org/wiki/Fedora_26_27_Mass_Rebuild

See Also

Package Description
mnemosyne-2.6.1-1.fc28.noarch.rpm Flash-card learning tool
moarvm-0.2018.04.1-1.fc28.i686.rpm Meta-model On A Runtime Virtual Machine
moarvm-devel-0.2018.04.1-1.fc28.i686.rpm Development files for moarvm
moby-engine-18.06.0-2.ce.git0ffa825.fc28.i686.rpm The open-source application container engine
moby-engine-fish-completion-18.06.0-2.ce.git0ffa825.fc28.i686.rpm Fish completion files for moby-engine
moby-engine-nano-18.06.0-2.ce.git0ffa825.fc28.i686.rpm nano syntax highlighting files for Moby
moby-engine-vim-18.06.0-2.ce.git0ffa825.fc28.i686.rpm Vim syntax highlighting files for moby-engine
moby-engine-zsh-completion-18.06.0-2.ce.git0ffa825.fc28.i686.rpm Zsh completion files for moby-engine
mock-1.4.14-1.fc28.noarch.rpm Builds packages inside chroots
mock-core-configs-30.2-1.fc28.noarch.rpm Mock core config files basic chroots
mock-lvm-1.4.14-1.fc28.noarch.rpm LVM plugin for mock
mock-scm-1.4.14-1.fc28.noarch.rpm Mock SCM integration module
mod_auth_mellon-0.14.0-3.fc28.i686.rpm A SAML 2.0 authentication module for the Apache Httpd Server
mod_auth_mellon-diagnostics-0.14.0-3.fc28.i686.rpm Build of mod_auth_mellon with diagnostic logging
mod_auth_token-1.0.5-18.fc28.i686.rpm Token based URI access module for Apache
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