R-GenomicAlignments-1.14.1-1.fc28.x86_64.rpm


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Description

R-GenomicAlignments - Representation and manipulation of short genomic alignments

Property Value
Distribution Fedora 28
Repository Fedora Updates Testing x86_64
Package name R-GenomicAlignments
Package version 1.14.1
Package release 1.fc28
Package architecture x86_64
Package type rpm
Installed size 2.43 MB
Download size 1.72 MB
Official Mirror dl.fedoraproject.org
Provides efficient containers for storing and manipulating short genomic
alignments (typically obtained by aligning short reads to a reference genome).
This includes read counting, computing the coverage, junction detection, and
working with the nucleotide content of the alignments.

Alternatives

Package Version Architecture Repository
R-GenomicAlignments-1.16.0-1.fc28.i686.rpm 1.16.0 i686 Fedora Updates
R-GenomicAlignments-1.16.0-1.fc28.x86_64.rpm 1.16.0 x86_64 Fedora Updates
R-GenomicAlignments-1.14.1-1.fc28.i686.rpm 1.14.1 i686 Fedora
R-GenomicAlignments-1.14.1-1.fc28.x86_64.rpm 1.14.1 x86_64 Fedora
R-GenomicAlignments-1.14.1-1.fc28.i686.rpm 1.14.1 i686 Fedora Updates Testing
R-GenomicAlignments - - -

Requires

Name Value
R-BiocGenerics >= 0.15.3
R-BiocParallel -
R-Biostrings >= 2.37.1
R-GenomeInfoDb >= 1.13.1
R-GenomicRanges >= 1.29.14
R-IRanges >= 2.11.16
R-Rsamtools >= 1.21.4
R-S4Vectors >= 0.13.13
R-SummarizedExperiment >= 1.5.3
R-core >= 3.3.0
R-methods -
R-stats -
R-utils -
libR.so()(64bit) -
libc.so.6(GLIBC_2.4)(64bit) -
rtld(GNU_HASH) -

Provides

Name Value
R-GenomicAlignments = 1.14.1-1.fc28
R-GenomicAlignments(x86-64) = 1.14.1-1.fc28

Download

Type URL
Binary Package R-GenomicAlignments-1.14.1-1.fc28.x86_64.rpm
Source Package R-GenomicAlignments-1.14.1-1.fc28.src.rpm

Install Howto

Install the R-GenomicAlignments rpm package:

# dnf --enablerepo=updates-testing install R-GenomicAlignments

Files

Path
/usr/lib/.build-id/
/usr/lib/.build-id/66/f12ba6120c8afa2b2ef63ab30112c30094a06e
/usr/lib64/R/library/GenomicAlignments/CITATION
/usr/lib64/R/library/GenomicAlignments/DESCRIPTION
/usr/lib64/R/library/GenomicAlignments/INDEX
/usr/lib64/R/library/GenomicAlignments/NAMESPACE
/usr/lib64/R/library/GenomicAlignments/NEWS
/usr/lib64/R/library/GenomicAlignments/Meta/Rd.rds
/usr/lib64/R/library/GenomicAlignments/Meta/features.rds
/usr/lib64/R/library/GenomicAlignments/Meta/hsearch.rds
/usr/lib64/R/library/GenomicAlignments/Meta/links.rds
/usr/lib64/R/library/GenomicAlignments/Meta/nsInfo.rds
/usr/lib64/R/library/GenomicAlignments/Meta/package.rds
/usr/lib64/R/library/GenomicAlignments/Meta/vignette.rds
/usr/lib64/R/library/GenomicAlignments/R/GenomicAlignments
/usr/lib64/R/library/GenomicAlignments/R/GenomicAlignments.rdb
/usr/lib64/R/library/GenomicAlignments/R/GenomicAlignments.rdx
/usr/lib64/R/library/GenomicAlignments/doc/GenomicAlignmentsIntroduction.R
/usr/lib64/R/library/GenomicAlignments/doc/GenomicAlignmentsIntroduction.Rnw
/usr/lib64/R/library/GenomicAlignments/doc/GenomicAlignmentsIntroduction.pdf
/usr/lib64/R/library/GenomicAlignments/doc/OverlapEncodings.R
/usr/lib64/R/library/GenomicAlignments/doc/OverlapEncodings.Rnw
/usr/lib64/R/library/GenomicAlignments/doc/OverlapEncodings.pdf
/usr/lib64/R/library/GenomicAlignments/doc/WorkingWithAlignedNucleotides.R
/usr/lib64/R/library/GenomicAlignments/doc/WorkingWithAlignedNucleotides.Rnw
/usr/lib64/R/library/GenomicAlignments/doc/WorkingWithAlignedNucleotides.pdf
/usr/lib64/R/library/GenomicAlignments/doc/index.html
/usr/lib64/R/library/GenomicAlignments/doc/summarizeOverlaps.R
/usr/lib64/R/library/GenomicAlignments/doc/summarizeOverlaps.Rnw
/usr/lib64/R/library/GenomicAlignments/doc/summarizeOverlaps.pdf
/usr/lib64/R/library/GenomicAlignments/extdata/sm_treated1.bam
/usr/lib64/R/library/GenomicAlignments/extdata/sm_untreated1.bam
/usr/lib64/R/library/GenomicAlignments/help/AnIndex
/usr/lib64/R/library/GenomicAlignments/help/GenomicAlignments.rdb
/usr/lib64/R/library/GenomicAlignments/help/GenomicAlignments.rdx
/usr/lib64/R/library/GenomicAlignments/help/aliases.rds
/usr/lib64/R/library/GenomicAlignments/help/paths.rds
/usr/lib64/R/library/GenomicAlignments/html/00Index.html
/usr/lib64/R/library/GenomicAlignments/html/GAlignmentPairs-class.html
/usr/lib64/R/library/GenomicAlignments/html/GAlignments-class.html
/usr/lib64/R/library/GenomicAlignments/html/GAlignmentsList-class.html
/usr/lib64/R/library/GenomicAlignments/html/GappedReads-class.html
/usr/lib64/R/library/GenomicAlignments/html/OverlapEncodings-class.html
/usr/lib64/R/library/GenomicAlignments/html/R.css
/usr/lib64/R/library/GenomicAlignments/html/cigar-utils.html
/usr/lib64/R/library/GenomicAlignments/html/coordinate-mapping-methods.html
/usr/lib64/R/library/GenomicAlignments/html/coverage-methods.html
/usr/lib64/R/library/GenomicAlignments/html/encodeOverlaps-methods.html
/usr/lib64/R/library/GenomicAlignments/html/findCompatibleOverlaps-methods.html
/usr/lib64/R/library/GenomicAlignments/html/findMateAlignment.html
/usr/lib64/R/library/GenomicAlignments/html/findOverlaps-methods.html
/usr/lib64/R/library/GenomicAlignments/html/findSpliceOverlaps-methods.html
/usr/lib64/R/library/GenomicAlignments/html/intra-range-methods.html
/usr/lib64/R/library/GenomicAlignments/html/junctions-methods.html
/usr/lib64/R/library/GenomicAlignments/html/pileLettersAt.html
/usr/lib64/R/library/GenomicAlignments/html/readGAlignments.html
/usr/lib64/R/library/GenomicAlignments/html/sequenceLayer.html
/usr/lib64/R/library/GenomicAlignments/html/setops-methods.html
/usr/lib64/R/library/GenomicAlignments/html/stackStringsFromBam.html
/usr/lib64/R/library/GenomicAlignments/html/summarizeOverlaps-methods.html
/usr/lib64/R/library/GenomicAlignments/libs/GenomicAlignments.so
/usr/lib64/R/library/GenomicAlignments/unitTests/test_GAlignments-class.R
/usr/lib64/R/library/GenomicAlignments/unitTests/test_GAlignmentsList-class.R
/usr/lib64/R/library/GenomicAlignments/unitTests/test_cigar-utils.R
/usr/lib64/R/library/GenomicAlignments/unitTests/test_coordinate-mapping-methods.R
/usr/lib64/R/library/GenomicAlignments/unitTests/test_findSpliceOverlaps-methods.R
/usr/lib64/R/library/GenomicAlignments/unitTests/test_intra-range-methods.R
/usr/lib64/R/library/GenomicAlignments/unitTests/test_readGAlignmentPairs.R
/usr/lib64/R/library/GenomicAlignments/unitTests/test_readGAlignments.R
/usr/lib64/R/library/GenomicAlignments/unitTests/test_readGAlignmentsList.R
/usr/lib64/R/library/GenomicAlignments/unitTests/test_summarizeOverlaps-methods.R

Changelog

2018-03-14 - Tom Callaway <spot@fedoraproject.org> - 1.14.1-1
- update to 1.14.1
2018-02-07 - Fedora Release Engineering <releng@fedoraproject.org> - 1.12.1-4
- Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild
2017-08-02 - Fedora Release Engineering <releng@fedoraproject.org> - 1.12.1-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Binutils_Mass_Rebuild
2017-07-26 - Fedora Release Engineering <releng@fedoraproject.org> - 1.12.1-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild
2017-05-31 - Tom Callaway <spot@fedoraproject.org> - 1.12.1-1
- initial package

See Also

Package Description
R-GenomicRanges-1.30.3-1.fc28.x86_64.rpm Representation and manipulation of genomic intervals
R-IRanges-2.12.0-1.fc28.x86_64.rpm Low-level containers for storing sets of integer ranges
R-IRanges-devel-2.12.0-1.fc28.i686.rpm Development files for R-IRanges
R-IRanges-devel-2.12.0-1.fc28.x86_64.rpm Development files for R-IRanges
R-R.methodsS3-1.7.1-2.fc28.noarch.rpm S3 Methods Simplified
R-R.oo-1.21.0-2.fc28.noarch.rpm R Object-Oriented Programming with or without References
R-R6-2.2.2-1.fc28.noarch.rpm Classes with Reference Semantics
R-RCurl-1.95.4.10-1.fc28.x86_64.rpm General network (HTTP/FTP) client interface for R
R-RSQLite-1.1.2-6.fc28.x86_64.rpm SQLite database interface for R
R-Rcompression-0.93.2-19.fc28.x86_64.rpm R Package for in-memory compression
R-Rcpp-1.0.0-1.fc28.i686.rpm Seamless R and C++ Integration
R-Rcpp-1.0.0-1.fc28.x86_64.rpm Seamless R and C++ Integration
R-Rcpp-devel-1.0.0-1.fc28.i686.rpm Rcpp Development Files
R-Rcpp-devel-1.0.0-1.fc28.x86_64.rpm Rcpp Development Files
R-Rcpp-examples-1.0.0-1.fc28.x86_64.rpm Rcpp Examples
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