R-BSgenome-1.48.0-1.fc28.noarch.rpm


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Description

R-BSgenome - Infrastructure for Biostrings-based genome data packages

Property Value
Distribution Fedora 28
Repository Fedora Updates x86_64
Package name R-BSgenome
Package version 1.48.0
Package release 1.fc28
Package architecture noarch
Package type rpm
Installed size 7.54 MB
Download size 6.70 MB
Official Mirror download-ib01.fedoraproject.org
Infrastructure shared by all the Biostrings-based genome data packages

Alternatives

Package Version Architecture Repository
R-BSgenome-1.48.0-1.fc28.noarch.rpm 1.48.0 noarch Fedora Updates
R-BSgenome-1.32.0-1.fc21.noarch.rpm 1.32.0 noarch Fedora
R-BSgenome-1.32.0-1.fc21.noarch.rpm 1.32.0 noarch Fedora
R-BSgenome - - -

Requires

Name Value
/bin/bash -
R-Biostrings -
R-GenomicRanges -
R-IRanges -
R-Rsamtools -
R-bitops -
R-core >= 3.0.0
R-methods -
R-rtracklayer -

Provides

Name Value
R-BSgenome = 1.48.0-1.fc28

Download

Type URL
Binary Package R-BSgenome-1.48.0-1.fc28.noarch.rpm
Source Package R-BSgenome-1.48.0-1.fc28.src.rpm

Install Howto

Install R-BSgenome rpm package:

# dnf install R-BSgenome

Files

Path
/usr/share/R/library/BSgenome/DESCRIPTION
/usr/share/R/library/BSgenome/INDEX
/usr/share/R/library/BSgenome/NAMESPACE
/usr/share/R/library/BSgenome/NEWS
/usr/share/R/library/BSgenome/Meta/Rd.rds
/usr/share/R/library/BSgenome/Meta/features.rds
/usr/share/R/library/BSgenome/Meta/hsearch.rds
/usr/share/R/library/BSgenome/Meta/links.rds
/usr/share/R/library/BSgenome/Meta/nsInfo.rds
/usr/share/R/library/BSgenome/Meta/package.rds
/usr/share/R/library/BSgenome/Meta/vignette.rds
/usr/share/R/library/BSgenome/R/BSgenome
/usr/share/R/library/BSgenome/R/BSgenome.rdb
/usr/share/R/library/BSgenome/R/BSgenome.rdx
/usr/share/R/library/BSgenome/doc/BSgenomeForge.R
/usr/share/R/library/BSgenome/doc/BSgenomeForge.Rnw
/usr/share/R/library/BSgenome/doc/BSgenomeForge.pdf
/usr/share/R/library/BSgenome/doc/GenomeSearching.R
/usr/share/R/library/BSgenome/doc/GenomeSearching.Rnw
/usr/share/R/library/BSgenome/doc/GenomeSearching.pdf
/usr/share/R/library/BSgenome/doc/index.html
/usr/share/R/library/BSgenome/extdata/ce2chrM.fa.gz
/usr/share/R/library/BSgenome/extdata/ce2chrX.fa.gz
/usr/share/R/library/BSgenome/extdata/ce2dict0.fa
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Amellifera.BeeBase.assembly4-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Amellifera.UCSC.apiMel2-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Amellifera.UCSC.apiMel2.masked-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Athaliana.TAIR.04232008-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Athaliana.TAIR.TAIR9-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau3-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau3.masked-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau4-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau4.masked-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau6-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau6.masked-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau8-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Celegans.UCSC.ce10-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Celegans.UCSC.ce11-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Celegans.UCSC.ce2-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Celegans.UCSC.ce6-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Cfamiliaris.UCSC.canFam2-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Cfamiliaris.UCSC.canFam2.masked-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Cfamiliaris.UCSC.canFam3-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Cfamiliaris.UCSC.canFam3.masked-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Dmelanogaster.UCSC.dm2-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Dmelanogaster.UCSC.dm2.masked-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Dmelanogaster.UCSC.dm3-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Dmelanogaster.UCSC.dm3.masked-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Dmelanogaster.UCSC.dm6-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer10-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer5-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer5.masked-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer6-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer6.masked-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer7-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer7.masked-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Ecoli.NCBI.20080805-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Gaculeatus.UCSC.gasAcu1-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Gaculeatus.UCSC.gasAcu1.masked-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal3-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal3.masked-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal4-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal4.masked-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal5-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Hsapiens.NCBI.GRCh38-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Hsapiens.UCSC.hg17-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Hsapiens.UCSC.hg17.masked-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Hsapiens.UCSC.hg18-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Hsapiens.UCSC.hg18.masked-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Hsapiens.UCSC.hg19-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Hsapiens.UCSC.hg19.masked-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Hsapiens.UCSC.hg38-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Hsapiens.UCSC.hg38.masked-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Mfascicularis.NCBI.5.0-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Mfuro.UCSC.musFur1-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac2-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac2.masked-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac3-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac3.masked-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac8-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Mmusculus.UCSC.mm10-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Mmusculus.UCSC.mm10.masked-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Mmusculus.UCSC.mm8-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Mmusculus.UCSC.mm8.masked-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Mmusculus.UCSC.mm9-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Mmusculus.UCSC.mm9.masked-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Ptroglodytes.UCSC.panTro2-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Ptroglodytes.UCSC.panTro2.masked-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Ptroglodytes.UCSC.panTro3-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Ptroglodytes.UCSC.panTro3.masked-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Ptroglodytes.UCSC.panTro5-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Rnorvegicus.UCSC.rn4-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Rnorvegicus.UCSC.rn4.masked-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Rnorvegicus.UCSC.rn5-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Rnorvegicus.UCSC.rn5.masked-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Rnorvegicus.UCSC.rn6-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Scerevisiae.UCSC.sacCer1-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Scerevisiae.UCSC.sacCer2-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Scerevisiae.UCSC.sacCer3-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Sscrofa.UCSC.susScr3-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Sscrofa.UCSC.susScr3.masked-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Tguttata.UCSC.taeGut1-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Tguttata.UCSC.taeGut1.masked-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Tguttata.UCSC.taeGut2-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.influenza.NCBI.20100628-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/ForgeAll.R
/usr/share/R/library/BSgenome/extdata/GentlemanLab/bump_seed_version.sh
/usr/share/R/library/BSgenome/extdata/GentlemanLab/1000genomes/BSgenome.Hsapiens.1000g.b36female-seed
/usr/share/R/library/BSgenome/extdata/GentlemanLab/1000genomes/BSgenome.Hsapiens.1000g.b36female-tools/split_human_b36_female.sh
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Amellifera.BeeBase.assembly4-tools/NOTES.TXT
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Amellifera.BeeBase.assembly4-tools/splitbigfasta.sh
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Athaliana.TAIR.TAIR9-tools/NOTES.TXT
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau6-tools/splitbigfasta.R
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Cfamiliaris.UCSC.canFam3-tools/splitbigfasta.R
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer10-tools/sort_danRer10.2bit.R
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer5-tools/NOTES.TXT
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer5-tools/splitbigfasta.sh
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer6-tools/NOTES.TXT
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer6-tools/splitbigfasta.R
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer7-tools/NOTES.TXT
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer7-tools/splitbigfasta.R
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal4-tools/splitbigfasta.R
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal5-tools/sort_galGal5.2bit.R
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Hsapiens.NCBI.GRCh38-tools/splitbigfasta.R
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Mfascicularis.NCBI.5.0-tools/fasta_to_sorted2bit.R
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac3-tools/splitbigfasta.R
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac8-tools/sort_rheMac8.2bit.R
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Ptroglodytes.UCSC.panTro3-tools/splitbigfasta.R
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Ptroglodytes.UCSC.panTro5-tools/sort_panTro5.2bit.R
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Rnorvegicus.UCSC.rn5-tools/splitbigfasta.R
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Sscrofa.UCSC.susScr3-tools/splitbigfasta.R
/usr/share/R/library/BSgenome/extdata/GentlemanLab/BSgenome.Tguttata.UCSC.taeGut2-tools/sort_taeGut2.2bit.R
/usr/share/R/library/BSgenome/help/AnIndex
/usr/share/R/library/BSgenome/help/BSgenome.rdb
/usr/share/R/library/BSgenome/help/BSgenome.rdx
/usr/share/R/library/BSgenome/help/aliases.rds
/usr/share/R/library/BSgenome/help/paths.rds
/usr/share/R/library/BSgenome/html/00Index.html
/usr/share/R/library/BSgenome/html/BSParams-class.html
/usr/share/R/library/BSgenome/html/BSgenome-class.html
/usr/share/R/library/BSgenome/html/BSgenome-utils.html
/usr/share/R/library/BSgenome/html/BSgenomeForge.html
/usr/share/R/library/BSgenome/html/BSgenomeViews-class.html
/usr/share/R/library/BSgenome/html/R.css
/usr/share/R/library/BSgenome/html/SNPlocs-class.html
/usr/share/R/library/BSgenome/html/XtraSNPlocs-class.html
/usr/share/R/library/BSgenome/html/available.genomes.html
/usr/share/R/library/BSgenome/html/bsapply.html
/usr/share/R/library/BSgenome/html/export-methods.html
/usr/share/R/library/BSgenome/html/getSeq-methods.html
/usr/share/R/library/BSgenome/html/injectSNPs.html
/usr/share/R/library/BSgenome/pkgtemplates/
/usr/share/R/library/BSgenome/pkgtemplates/BSgenome_datapkg/DESCRIPTION
/usr/share/R/library/BSgenome/pkgtemplates/BSgenome_datapkg/NAMESPACE
/usr/share/R/library/BSgenome/pkgtemplates/BSgenome_datapkg/R/zzz.R
/usr/share/R/library/BSgenome/pkgtemplates/BSgenome_datapkg/inst/
/usr/share/R/library/BSgenome/pkgtemplates/BSgenome_datapkg/inst/extdata/
/usr/share/R/library/BSgenome/pkgtemplates/BSgenome_datapkg/man/package.Rd
/usr/share/R/library/BSgenome/pkgtemplates/MaskedBSgenome_datapkg/DESCRIPTION
/usr/share/R/library/BSgenome/pkgtemplates/MaskedBSgenome_datapkg/NAMESPACE
/usr/share/R/library/BSgenome/pkgtemplates/MaskedBSgenome_datapkg/R/zzz.R
/usr/share/R/library/BSgenome/pkgtemplates/MaskedBSgenome_datapkg/inst/
/usr/share/R/library/BSgenome/pkgtemplates/MaskedBSgenome_datapkg/inst/extdata/
/usr/share/R/library/BSgenome/pkgtemplates/MaskedBSgenome_datapkg/man/package.Rd

Changelog

2018-07-10 - Pierre-Yves Chibon <pingou@pingoured.fr> - 1.48.0-1
- Update toi 1.48.0
2018-02-07 - Fedora Release Engineering <releng@fedoraproject.org> - 1.38.0-4
- Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild
2017-07-26 - Fedora Release Engineering <releng@fedoraproject.org> - 1.38.0-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild
2017-02-10 - Fedora Release Engineering <releng@fedoraproject.org> - 1.38.0-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_26_Mass_Rebuild
2016-02-11 - pingou <pingou@pingoured.fr> 1.38.0-1
- Update to version 1.38.0
2016-02-03 - Fedora Release Engineering <releng@fedoraproject.org> - 1.36.2-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild
2015-07-03 - pingou <pingou@pingoured.fr> 1.36.2-1
- Update to version 1.36.2
- Add R-rtracklayer as BR and R
2015-06-16 - Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.32.0-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild
2014-07-02 - pingou <pingou@pingoured.fr> 1.32.0-1
- Update to version 1.32.0
- Add R-Rsamtools and R-bitops as R and BR
2014-06-06 - Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.30.0-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_Mass_Rebuild

See Also

Package Description
R-BSgenome.Celegans.UCSC.ce2-1.4.0-6.fc28.noarch.rpm Caenorhabditis elegans genome (UCSC Release ce2)
R-Bessel-0.5.5-1.fc28.x86_64.rpm Bessel functions computations and approximations
R-Biobase-2.40.0-1.fc28.x86_64.rpm Base functions for Bioconductor
R-BiocGenerics-0.26.0-1.fc28.noarch.rpm Generic functions for Bioconductor
R-BiocParallel-1.14.1-1.fc28.x86_64.rpm Bioconductor facilities for parallel evaluation
R-Biostrings-2.48.0-1.fc28.x86_64.rpm String objects representing biological sequences
R-Biostrings-devel-2.48.0-1.fc28.i686.rpm Development files for R-Biostrings
R-Biostrings-devel-2.48.0-1.fc28.x86_64.rpm Development files for R-Biostrings
R-BufferedMatrix-1.44.0-1.fc28.i686.rpm A matrix data storage object method from bioconductor
R-BufferedMatrix-1.44.0-1.fc28.x86_64.rpm A matrix data storage object method from bioconductor
R-BufferedMatrix-devel-1.44.0-1.fc28.i686.rpm Development files for R-BufferedMatrix
R-BufferedMatrix-devel-1.44.0-1.fc28.x86_64.rpm Development files for R-BufferedMatrix
R-BufferedMatrixMethods-1.44.0-1.fc28.x86_64.rpm Microarray Data related methods that utlize BufferedMatrix
R-COPASI-4.24.197-1.fc28.x86_64.rpm COPASI R Bindings
R-Cairo-1.5.9-4.fc28.x86_64.rpm Use cairo as a high-quality graphics device
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