bionetgen-2.4.0-2.fc28.x86_64.rpm


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Description

bionetgen - Software for rule-based modeling of biochemical systems

Property Value
Distribution Fedora 28
Repository Fedora Updates x86_64
Package filename bionetgen-2.4.0-2.fc28.x86_64.rpm
Package name bionetgen
Package version 2.4.0
Package release 2.fc28
Package architecture x86_64
Package type rpm
Homepage https://github.com/RuleWorld/bionetgen
License GPLv3
Maintainer -
Download size 212.69 KB
Installed size 569.06 KB
BioNetGen is software for the specification and simulation of
rule-based models of biochemical systems, including signal
transduction, metabolic, and genetic regulatory networks. The
BioNetGen language has recently been extended to include explicit
representation of compartments. A review of methods for rule-based
modeling is available in Science Signaling (Sci. STKE, 18 July 2006,
Issue 344, p. re6).
BioNetGen is presently a mixture of Perl and C++. Network generation
is currently implemented in Perl, the network simulator is C++, and a
new language parser is being developed with ANTLR.

Alternatives

Package Version Architecture Repository
bionetgen-2.4.0-2.fc28.i686.rpm 2.4.0 i686 Fedora Updates
bionetgen-2.3.0-5.fc28.i686.rpm 2.3.0 i686 Fedora
bionetgen-2.3.0-5.fc28.x86_64.rpm 2.3.0 x86_64 Fedora
bionetgen - - -

Requires

Name Value
bionetgen-perl = 2.4.0-2.fc28
libc.so.6(GLIBC_2.14)(64bit) -
libgcc_s.so.1()(64bit) -
libgcc_s.so.1(GCC_3.0)(64bit) -
libm.so.6()(64bit) -
libm.so.6(GLIBC_2.2.5)(64bit) -
libmuparser.so.2()(64bit) -
libstdc++.so.6()(64bit) -
libstdc++.so.6(CXXABI_1.3)(64bit) -
libstdc++.so.6(CXXABI_1.3.8)(64bit) -
libstdc++.so.6(CXXABI_1.3.9)(64bit) -
libstdc++.so.6(GLIBCXX_3.4)(64bit) -
libstdc++.so.6(GLIBCXX_3.4.11)(64bit) -
libstdc++.so.6(GLIBCXX_3.4.20)(64bit) -
libstdc++.so.6(GLIBCXX_3.4.21)(64bit) -
libstdc++.so.6(GLIBCXX_3.4.9)(64bit) -
libsundials_cvode.so.3()(64bit) -
libsundials_nvecserial.so.3()(64bit) -
rtld(GNU_HASH) -

Provides

Name Value
bionetgen = 2.4.0-2.fc28
bionetgen(x86-64) = 2.4.0-2.fc28

Download

Type URL
Mirror download-ib01.fedoraproject.org
Binary Package bionetgen-2.4.0-2.fc28.x86_64.rpm
Source Package bionetgen-2.4.0-2.fc28.src.rpm

Install Howto

Install bionetgen rpm package:

# dnf install bionetgen

Files

Path
/usr/bin/run_network
/usr/lib/.build-id/
/usr/lib/.build-id/3a/e772923cbc5c7a0ceaa64fd575d240f402f2da
/usr/share/doc/bionetgen/CHANGES.txt
/usr/share/doc/bionetgen/CREDITS.txt
/usr/share/doc/bionetgen/README.md
/usr/share/doc/bionetgen/VERSION
/usr/share/licenses/bionetgen/LICENSE

Changelog

2018-11-09 - Antonio Trande <sagitterATfedoraproject.org> - 2.4.0-2
- Filtering of SBMLMultiAux module
2018-11-08 - Antonio Trande <sagitterATfedoraproject.org> - 2.4.0-1
- Release 2.4.0
- Drop obsolete patch
- Rebuild on epel7 (rhbz#1647989)
2018-07-12 - Fedora Release Engineering <releng@fedoraproject.org> - 2.3.0-9
- Rebuilt for https://fedoraproject.org/wiki/Fedora_29_Mass_Rebuild
2018-06-28 - Jitka Plesnikova <jplesnik@redhat.com> - 2.3.0-8
- Perl 5.28 rebuild
2018-02-07 - Fedora Release Engineering <releng@fedoraproject.org> - 2.3.0-7
- Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild
2017-11-08 - Antonio Trande <sagitterATfedoraproject.org> - 2.3.0-6
- Rebuild for sundials-3.0.0
2017-08-02 - Fedora Release Engineering <releng@fedoraproject.org> - 2.3.0-5
- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Binutils_Mass_Rebuild
2017-07-26 - Fedora Release Engineering <releng@fedoraproject.org> - 2.3.0-4
- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild
2017-06-04 - Jitka Plesnikova <jplesnik@redhat.com> - 2.3.0-3
- Perl 5.26 rebuild
2017-05-15 - Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.3.0-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_26_27_Mass_Rebuild

See Also

Package Description
bionetgen-perl-2.4.0-2.fc28.noarch.rpm Perl scripts used by bionetgen
biosig4c++-1.9.3-1.git94296e0.fc28.i686.rpm A software library for processing of biomedical signals
biosig4c++-1.9.3-1.git94296e0.fc28.x86_64.rpm A software library for processing of biomedical signals
biosig4c++-devel-1.9.3-1.git94296e0.fc28.i686.rpm A software library for processing of biomedical signals
biosig4c++-devel-1.9.3-1.git94296e0.fc28.x86_64.rpm A software library for processing of biomedical signals
bird-1.6.4-2.fc28.x86_64.rpm BIRD Internet Routing Daemon
bird-doc-1.6.4-2.fc28.x86_64.rpm BIRD Internet Routing Daemon
bird6-1.6.4-2.fc28.x86_64.rpm BIRD Internet Routing Daemon
bitlbee-discord-0.4.2-1.fc28.x86_64.rpm Bitlbee plugin for Discord
bitstream-devel-1.4-1.fc28.noarch.rpm Simpler access to binary structures such as specified by MPEG, DVB, IETF
blas-3.8.0-9.fc28.i686.rpm The Basic Linear Algebra Subprograms library
blas-3.8.0-9.fc28.x86_64.rpm The Basic Linear Algebra Subprograms library
blas-devel-3.8.0-9.fc28.i686.rpm BLAS development libraries
blas-devel-3.8.0-9.fc28.x86_64.rpm BLAS development libraries
blas-static-3.8.0-9.fc28.i686.rpm BLAS static libraries
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