fastx_toolkit-0.0.14-21.fc29.i686.rpm


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Description

fastx_toolkit - Tools to process short-reads FASTA/FASTQ files

Property Value
Distribution Fedora 29
Repository Fedora i386
Package filename fastx_toolkit-0.0.14-21.fc29.i686.rpm
Package name fastx_toolkit
Package version 0.0.14
Package release 21.fc29
Package architecture i686
Package type rpm
Category Applications/Engineering
Homepage http://hannonlab.cshl.edu/fastx_toolkit/index.html
License AGPLv3+
Maintainer -
Download size 120.88 KB
Installed size 529.08 KB
The FASTX-Toolkit is a collection of command line tools for
Short-Reads FASTA/FASTQ files preprocessing.
Next-Generation sequencing machines usually produce FASTA or FASTQ
files, containing multiple short-reads sequences (possibly with
quality information).
The main processing of such FASTA/FASTQ files is mapping (aka
aligning) the sequences to reference genomes or other databases using
specialized programs. Example of such mapping programs are: Blat,
SHRiMP, LastZ, MAQ and many many others.
However, It is sometimes more productive to preprocess the FASTA/FASTQ
files before mapping the sequences to the genome - manipulating the
sequences to produce better mapping results.
The FASTX-Toolkit tools perform some of these preprocessing tasks.

Alternatives

Package Version Architecture Repository
fastx_toolkit-0.0.14-21.fc29.x86_64.rpm 0.0.14 x86_64 Fedora
fastx_toolkit - - -

Requires

Name Value
/usr/bin/bash -
/usr/bin/perl -
libc.so.6(GLIBC_2.4) -
libgcc_s.so.1 -
libgcc_s.so.1(GCC_3.0) -
libgtextutils-0.7.so.0 -
libm.so.6 -
libstdc++.so.6 -
libstdc++.so.6(CXXABI_1.3) -
libstdc++.so.6(CXXABI_1.3.5) -
libstdc++.so.6(GLIBCXX_3.4) -
libstdc++.so.6(GLIBCXX_3.4.11) -
libstdc++.so.6(GLIBCXX_3.4.15) -
libstdc++.so.6(GLIBCXX_3.4.18) -
libstdc++.so.6(GLIBCXX_3.4.20) -
libstdc++.so.6(GLIBCXX_3.4.21) -
libstdc++.so.6(GLIBCXX_3.4.9) -
perl(Carp) -
perl(Data::Dumper) -
perl(GD::Graph::bars) -
perl(Getopt::Long) -
perl(IO::Handle) -
perl(PerlIO::gzip) -
perl(strict) -
perl(warnings) -
perl-GDGraph -
perl-PerlIO-gzip -
rtld(GNU_HASH) -
sed -

Provides

Name Value
fastx_toolkit = 0.0.14-21.fc29
fastx_toolkit(x86-32) = 0.0.14-21.fc29

Download

Type URL
Mirror download-ib01.fedoraproject.org
Binary Package fastx_toolkit-0.0.14-21.fc29.i686.rpm
Source Package fastx_toolkit-0.0.14-21.fc29.src.rpm

Install Howto

Install fastx_toolkit rpm package:

# dnf install fastx_toolkit

Files

Path
/usr/bin/fasta_clipping_histogram.pl
/usr/bin/fasta_formatter
/usr/bin/fasta_nucleotide_changer
/usr/bin/fastq_masker
/usr/bin/fastq_quality_boxplot_graph.sh
/usr/bin/fastq_quality_converter
/usr/bin/fastq_quality_filter
/usr/bin/fastq_quality_trimmer
/usr/bin/fastq_to_fasta
/usr/bin/fastx_artifacts_filter
/usr/bin/fastx_barcode_splitter.pl
/usr/bin/fastx_clipper
/usr/bin/fastx_collapser
/usr/bin/fastx_nucleotide_distribution_graph.sh
/usr/bin/fastx_nucleotide_distribution_line_graph.sh
/usr/bin/fastx_quality_stats
/usr/bin/fastx_renamer
/usr/bin/fastx_reverse_complement
/usr/bin/fastx_trimmer
/usr/bin/fastx_uncollapser
/usr/lib/.build-id/
/usr/lib/.build-id/00/48234d5366e393943b669c6a90516bc88e1d56
/usr/lib/.build-id/05/d7e6212e54f705a791a3e7f3c6c0399c8864e2
/usr/lib/.build-id/36/0bf8424b12ac777a555a1faf0579c649ba4ae9
/usr/lib/.build-id/36/9c05f534ec108ec4a64f92a5a9f0f22a2bf1a7
/usr/lib/.build-id/3a/a9743bb46643096e2776c1f343d456d8065649
/usr/lib/.build-id/5f/7302638e904a9b0374b06e1048d43b72e86530
/usr/lib/.build-id/60/7bc4500f535f76ef1f8c7c5e3c568c8519ffce
/usr/lib/.build-id/7e/11bdb80765632b89010a31e3aae9198b01b9b1
/usr/lib/.build-id/7e/6b694abc3aa7b19330013a47e644808c62942c
/usr/lib/.build-id/a0/7b5326fa86ae08293eadcef0f22cc2f502da0c
/usr/lib/.build-id/a9/f927284c26ea5964b648d5fbb0219a6057a0a9
/usr/lib/.build-id/be/181027c379ad6874e8ef8d1e20b9d324ca039d
/usr/lib/.build-id/e3/051f6748edfca662e9a54a0ce74b4995969ee9
/usr/lib/.build-id/f5/cbc86926f623f03197d8801daca6f24f93dc58
/usr/lib/.build-id/fb/273a9823c42316baabc62cd06d9bc2c2fc8e0b
/usr/share/doc/fastx_toolkit/AUTHORS
/usr/share/doc/fastx_toolkit/COPYING
/usr/share/doc/fastx_toolkit/NEWS
/usr/share/doc/fastx_toolkit/README
/usr/share/doc/fastx_toolkit/THANKS

Changelog

2018-07-21 - Adam Huffman <bloch@verdurin.com> - 0.0.14-21
- Add BR for gcc-c++
2018-07-13 - Fedora Release Engineering <releng@fedoraproject.org> - 0.0.14-20
- Rebuilt for https://fedoraproject.org/wiki/Fedora_29_Mass_Rebuild
2018-02-07 - Fedora Release Engineering <releng@fedoraproject.org> - 0.0.14-19
- Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild
2017-08-02 - Fedora Release Engineering <releng@fedoraproject.org> - 0.0.14-18
- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Binutils_Mass_Rebuild
2017-07-26 - Fedora Release Engineering <releng@fedoraproject.org> - 0.0.14-17
- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild
2017-02-10 - Fedora Release Engineering <releng@fedoraproject.org> - 0.0.14-16
- Rebuilt for https://fedoraproject.org/wiki/Fedora_26_Mass_Rebuild

See Also

Package Description
fastx_toolkit-galaxy-0.0.14-21.fc29.i686.rpm Integrate fastx_toolkit with a local Galaxy installation
fatrace-0.13-3.fc29.i686.rpm Reports file access events from all running processes
fatresize-1.0.4-2.fc29.i686.rpm FAT16/FAT32 resizer
fatsort-1.4.2.439-3.fc29.i686.rpm FAT sorter for FAT16 and FAT32 filesystems
faust-0.9.46-15.fc29.i686.rpm Compiled language for real-time audio signal processing
faust-doc-0.9.46-15.fc29.noarch.rpm Documentation for faust
faust-kate-0.9.46-15.fc29.noarch.rpm Kate/Kwrite plugin for faust
faust-osclib-0.9.46-15.fc29.i686.rpm OSCLib Library
faust-osclib-devel-0.9.46-15.fc29.i686.rpm Headers for the OSCLib Library
faust-tools-0.9.46-15.fc29.noarch.rpm 3rd party tools written for faust
fawkes-1.0.1-18.fc29.i686.rpm Robot Software Framework
fawkes-core-1.0.1-18.fc29.i686.rpm Fawkes base system
fawkes-devel-1.0.1-18.fc29.i686.rpm Development files for Fawkes
fawkes-devenv-1.0.1-18.fc29.i686.rpm Development environment Fawkes
fawkes-doc-1.0.1-18.fc29.noarch.rpm Fawkes API documentation
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