percolator-3.02.00-3.fc29.i686.rpm


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Description

percolator - Software for postprocessing of shotgun proteomics data

Property Value
Distribution Fedora 29
Repository Fedora i386
Package name percolator
Package version 3.02.00
Package release 3.fc29
Package architecture i686
Package type rpm
Installed size 6.86 MB
Download size 1.76 MB
Official Mirror download-ib01.fedoraproject.org
The first step in analyzing an mass spectrometry assay is to match
the harvested spectra against a target database
using database search engines such as Sequest and Mascot,
a process that renders list of peptide-spectrum matches.
However, it is not trivial to assess the accuracy
of these identifications.
Percolator uses a semi-supervised machine learning to
discriminate correct from incorrect peptide-spectrum matches,
and calculates accurate statistics such as q-value (FDR)
and posterior error probabilities.

Alternatives

Package Version Architecture Repository
percolator-3.02.01-1.fc29.x86_64.rpm 3.02.01 x86_64 Fedora Updates
percolator-3.02.01-1.fc29.i686.rpm 3.02.01 i686 Fedora Updates
percolator-3.02.00-3.fc29.x86_64.rpm 3.02.00 x86_64 Fedora
percolator - - -

Requires

Name Value
libbz2.so.1 -
libc.so.6(GLIBC_2.4) -
libdl.so.2 -
libgcc_s.so.1 -
libgcc_s.so.1(GCC_3.0) -
libgcc_s.so.1(GLIBC_2.0) -
libgomp.so.1 -
libgomp.so.1(GOMP_1.0) -
libgomp.so.1(GOMP_4.0) -
libm.so.6 -
libm.so.6(GLIBC_2.0) -
libm.so.6(GLIBC_2.1) -
libpthread.so.0 -
libpthread.so.0(GLIBC_2.0) -
libpthread.so.0(GLIBC_2.2) -
libsqlite3.so.0 -
libstdc++.so.6 -
libstdc++.so.6(CXXABI_1.3) -
libstdc++.so.6(CXXABI_1.3.1) -
libstdc++.so.6(CXXABI_1.3.8) -
libstdc++.so.6(CXXABI_1.3.9) -
libstdc++.so.6(GLIBCXX_3.4) -
libstdc++.so.6(GLIBCXX_3.4.11) -
libstdc++.so.6(GLIBCXX_3.4.15) -
libstdc++.so.6(GLIBCXX_3.4.20) -
libstdc++.so.6(GLIBCXX_3.4.21) -
libstdc++.so.6(GLIBCXX_3.4.5) -
libstdc++.so.6(GLIBCXX_3.4.9) -
libtirpc.so.3 -
libtirpc.so.3(TIRPC_0.3.0) -
libtokyocabinet.so.9 -
libxerces-c-3.2.so -
libz.so.1 -
libz.so.1(ZLIB_1.2.0) -
percolator-data = 3.02.00-3.fc29
rtld(GNU_HASH) -

Provides

Name Value
percolator = 3.02.00-3.fc29
percolator(x86-32) = 3.02.00-3.fc29

Download

Type URL
Binary Package percolator-3.02.00-3.fc29.i686.rpm
Source Package percolator-3.02.00-3.fc29.src.rpm

Install Howto

Install percolator rpm package:

# dnf install percolator

Files

Path
/usr/bin/elude
/usr/bin/msgf2pin
/usr/bin/percolator
/usr/bin/qvality
/usr/bin/sqt2pin
/usr/bin/tandem2pin
/usr/lib/.build-id/
/usr/lib/.build-id/0c/bd043ced8ff24048086c55a57f23a7694097df
/usr/lib/.build-id/48/0ed571a4b3d420d3434e292357fbf202c8a59a
/usr/lib/.build-id/55/cee705c5d940c0a9cee0e5099507b781b81d28
/usr/lib/.build-id/ac/4a8ea818132d0021ab23431b457c8918675af6
/usr/lib/.build-id/cd/027363be50f7ddb4f3a45ca45af950fd322355
/usr/lib/.build-id/f7/2fac6a9faa84889cb1ec68e93e109be0f3273e

Changelog

2018-07-13 - Fedora Release Engineering <releng@fedoraproject.org> - 3.02.00-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_29_Mass_Rebuild
2018-02-22 - Antonio Trande <sagitterATfedoraproject.org> - 3.02.00-2
- Add gcc gcc-c++ BR
2018-02-15 - Antonio Trande <sagitter@fedoraproject.org> - 3.02.00-1
- Update to 3.02.0
- Drop old patches
- Link to libtirpc on fedora
2017-10-15 - Antonio Trande <sagitter@fedoraproject.org> - 3.01.02-1
- Update to 3.01.02
2017-08-03 - Fedora Release Engineering <releng@fedoraproject.org> - 3.01-6
- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Binutils_Mass_Rebuild
2017-07-27 - Fedora Release Engineering <releng@fedoraproject.org> - 3.01-5
- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild
2017-07-08 - Antonio Trande <sagitter@fedoraproject.org> - 3.01-4
- URL changed to GitHub
2017-02-11 - Fedora Release Engineering <releng@fedoraproject.org> - 3.01-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_26_Mass_Rebuild
2017-02-01 - Jonathan Wakely <jwakely@redhat.com> - 3.01-2
- Rebuilt for Boost 1.63 and patched for GCC 7
2016-11-17 - Antonio Trande <sagitter@fedoraproject.org> - 3.01-1
- Update to 3.01

See Also

Package Description
percolator-data-3.02.00-3.fc29.noarch.rpm percolator data files
percolator-static-3.02.00-3.fc29.i686.rpm percolator static libraries
percona-xtrabackup-2.3.6-10.fc29.i686.rpm Online backup for InnoDB/XtraDB in MySQL, Percona Server and MariaDB
percona-xtrabackup-test-2.3.6-10.fc29.i686.rpm Test suite for Percona Xtrabackup
perdition-2.1-7.fc26.i686.rpm Mail Retrieval Proxy
perdition-bdb-2.1-7.fc26.i686.rpm Library to allow perdition to access Berkely DB based pop maps
perdition-cdb-2.1-7.fc26.i686.rpm Library to allow perdition to access Constant DB based pop maps
perdition-ldap-2.1-7.fc26.i686.rpm Library to allow perdition to access LDAP based pop maps
perdition-mysql-2.1-7.fc26.i686.rpm Library to allow perdition to access MySQL based pop maps
perdition-odbc-2.1-7.fc26.i686.rpm Library to allow perdition to access pop maps via ODBC
perdition-postgresql-2.1-7.fc26.i686.rpm Library to allow perdition to access PostgreSQL based pop maps
perf-4.18.10-300.fc29.i686.rpm Performance monitoring for the Linux kernel
perftest-4.2-3.fc29.i686.rpm IB Performance Tests
peripety-0.1.2-3.fc29.i686.rpm Storage event notification daemon
perl-5.28.0-423.fc29.i686.rpm Practical Extraction and Report Language
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