percolator-3.02.01-1.fc29.i686.rpm


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Description

percolator - Software for postprocessing of shotgun proteomics data

Property Value
Distribution Fedora 29
Repository Fedora Updates i386
Package filename percolator-3.02.01-1.fc29.i686.rpm
Package name percolator
Package version 3.02.01
Package release 1.fc29
Package architecture i686
Package type rpm
Homepage https://github.com/percolator/percolator
License ASL 2.0 and MIT and BSD and LGPLv2+
Maintainer -
Download size 1.70 MB
Installed size 6.90 MB
The first step in analyzing an mass spectrometry assay is to match
the harvested spectra against a target database
using database search engines such as Sequest and Mascot,
a process that renders list of peptide-spectrum matches.
However, it is not trivial to assess the accuracy
of these identifications.
Percolator uses a semi-supervised machine learning to
discriminate correct from incorrect peptide-spectrum matches,
and calculates accurate statistics such as q-value (FDR)
and posterior error probabilities.

Alternatives

Package Version Architecture Repository
percolator-3.02.01-1.fc29.x86_64.rpm 3.02.01 x86_64 Fedora Updates
percolator-3.02.00-3.fc29.i686.rpm 3.02.00 i686 Fedora
percolator-3.02.00-3.fc29.x86_64.rpm 3.02.00 x86_64 Fedora
percolator - - -

Requires

Name Value
libbz2.so.1 -
libc.so.6(GLIBC_2.4) -
libdl.so.2 -
libgcc_s.so.1 -
libgcc_s.so.1(GCC_3.0) -
libgcc_s.so.1(GLIBC_2.0) -
libgomp.so.1 -
libgomp.so.1(GOMP_1.0) -
libgomp.so.1(GOMP_4.0) -
libm.so.6 -
libm.so.6(GLIBC_2.0) -
libm.so.6(GLIBC_2.1) -
libpthread.so.0 -
libpthread.so.0(GLIBC_2.0) -
libpthread.so.0(GLIBC_2.2) -
libsqlite3.so.0 -
libstdc++.so.6 -
libstdc++.so.6(CXXABI_1.3) -
libstdc++.so.6(CXXABI_1.3.1) -
libstdc++.so.6(CXXABI_1.3.8) -
libstdc++.so.6(CXXABI_1.3.9) -
libstdc++.so.6(GLIBCXX_3.4) -
libstdc++.so.6(GLIBCXX_3.4.11) -
libstdc++.so.6(GLIBCXX_3.4.15) -
libstdc++.so.6(GLIBCXX_3.4.20) -
libstdc++.so.6(GLIBCXX_3.4.21) -
libstdc++.so.6(GLIBCXX_3.4.5) -
libstdc++.so.6(GLIBCXX_3.4.9) -
libtirpc.so.3 -
libtirpc.so.3(TIRPC_0.3.0) -
libtokyocabinet.so.9 -
libxerces-c-3.2.so -
libz.so.1 -
libz.so.1(ZLIB_1.2.0) -
percolator-data = 3.02.01-1.fc29
rtld(GNU_HASH) -

Provides

Name Value
percolator = 3.02.01-1.fc29
percolator(x86-32) = 3.02.01-1.fc29

Download

Type URL
Mirror download-ib01.fedoraproject.org
Binary Package percolator-3.02.01-1.fc29.i686.rpm
Source Package percolator-3.02.01-1.fc29.src.rpm

Install Howto

Install percolator rpm package:

# dnf install percolator

Files

Path
/usr/bin/elude
/usr/bin/msgf2pin
/usr/bin/percolator
/usr/bin/qvality
/usr/bin/sqt2pin
/usr/bin/tandem2pin
/usr/lib/.build-id/
/usr/lib/.build-id/11/97c2a0fa6c8c4f0de295b9af738780db9e3986
/usr/lib/.build-id/20/4c6fb4b2dc205aa35bb1730a9f4fb685783021
/usr/lib/.build-id/62/847c70676b8630525122484f33a7e087f249ed
/usr/lib/.build-id/86/f8487f4d62f5ec1410a8decd4a779242861cc0
/usr/lib/.build-id/95/37889f853d070dc061e8a433537eb422e1dab4
/usr/lib/.build-id/aa/b0a354646fff892d31f3539218d4af001cf598

Changelog

2018-11-03 - Antonio Trande <sagitter@fedoraproject.org> - 3.02.01-1
- Release 3.02.01
2018-07-13 - Fedora Release Engineering <releng@fedoraproject.org> - 3.02.00-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_29_Mass_Rebuild
2018-02-22 - Antonio Trande <sagitterATfedoraproject.org> - 3.02.00-2
- Add gcc gcc-c++ BR
2018-02-15 - Antonio Trande <sagitter@fedoraproject.org> - 3.02.00-1
- Update to 3.02.0
- Drop old patches
- Link to libtirpc on fedora
2017-10-15 - Antonio Trande <sagitter@fedoraproject.org> - 3.01.02-1
- Update to 3.01.02
2017-08-03 - Fedora Release Engineering <releng@fedoraproject.org> - 3.01-6
- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Binutils_Mass_Rebuild
2017-07-27 - Fedora Release Engineering <releng@fedoraproject.org> - 3.01-5
- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild
2017-07-08 - Antonio Trande <sagitter@fedoraproject.org> - 3.01-4
- URL changed to GitHub
2017-02-11 - Fedora Release Engineering <releng@fedoraproject.org> - 3.01-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_26_Mass_Rebuild
2017-02-01 - Jonathan Wakely <jwakely@redhat.com> - 3.01-2
- Rebuilt for Boost 1.63 and patched for GCC 7

See Also

Package Description
percolator-data-3.02.01-1.fc29.noarch.rpm percolator data files
percolator-static-3.02.01-1.fc29.i686.rpm percolator static libraries
percona-xtrabackup-2.3.6-11.fc29.i686.rpm Online backup for InnoDB/XtraDB in MySQL, Percona Server and MariaDB
percona-xtrabackup-test-2.3.6-11.fc29.i686.rpm Test suite for Percona Xtrabackup
perdition-2.2-2.fc29.i686.rpm Mail Retrieval Proxy
perdition-bdb-2.2-2.fc29.i686.rpm Library to allow perdition to access Berkely DB based pop maps
perdition-cdb-2.2-2.fc29.i686.rpm Library to allow perdition to access Constant DB based pop maps
perdition-ldap-2.2-2.fc29.i686.rpm Library to allow perdition to access LDAP based pop maps
perdition-mysql-2.2-2.fc29.i686.rpm Library to allow perdition to access MySQL based pop maps
perdition-odbc-2.2-2.fc29.i686.rpm Library to allow perdition to access pop maps via ODBC
perdition-postgresql-2.2-2.fc29.i686.rpm Library to allow perdition to access PostgreSQL based pop maps
perf-5.0.7-200.fc29.i686.rpm Performance monitoring for the Linux kernel
perl-5.28.1-429.fc29.i686.rpm Practical Extraction and Report Language
perl-Alien-Base-ModuleBuild-1.06-1.fc29.noarch.rpm Perl framework for building Alien:: modules and their libraries
perl-Alien-Build-1.55-1.fc29.noarch.rpm Build external dependencies for use in CPAN
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