R-ape-5.3-1.fc30.i686.rpm


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Description

R-ape - Analyses of Phylogenetics and Evolution

Property Value
Distribution Fedora 30
Repository Fedora Updates Testing i386
Package filename R-ape-5.3-1.fc30.i686.rpm
Package name R-ape
Package version 5.3
Package release 1.fc30
Package architecture i686
Package type rpm
Homepage https://CRAN.R-project.org/package=ape
License GPLv2+
Maintainer -
Download size 2.25 MB
Installed size 3.16 MB
Functions for reading, writing, plotting, and manipulating phylogenetic
trees, analyses of comparative data in a phylogenetic framework, ancestral
character analyses, analyses of diversification and macroevolution,
computing distances from DNA sequences, reading and writing nucleotide
sequences as well as importing from BioConductor, and several tools such
as Mantel's test, generalized skyline plots, graphical exploration of
phylogenetic data (alex, trex, kronoviz), estimation of absolute
evolutionary rates and clock-like trees using mean path lengths and
penalized likelihood, dating trees with non-contemporaneous sequences,
translating DNA into AA sequences, and assessing sequence alignments.
Phylogeny estimation can be done with the NJ, BIONJ, ME, MVR, SDM, and
triangle methods, and several methods handling incomplete distance
matrices (NJ*, BIONJ*, MVR*, and the corresponding triangle method). Some
functions call external applications (PhyML, Clustal, T-Coffee, Muscle)
whose results are returned into R.

Alternatives

Package Version Architecture Repository
R-ape-5.3-1.fc30.i686.rpm 5.3 i686 Fedora
R-ape-5.3-1.fc30.x86_64.rpm 5.3 x86_64 Fedora
R-ape-5.3-1.fc30.x86_64.rpm 5.3 x86_64 Fedora Updates Testing
R-ape - - -

Requires

Name Value
R-Rcpp >= 0.12.0
R-graphics -
R-lattice -
R-methods -
R-nlme -
R-parallel -
R-stats -
R-tools -
R-utils -
libR.so -
libRlapack.so -
libc.so.6(GLIBC_2.4) -
libgcc_s.so.1 -
libgcc_s.so.1(GCC_3.0) -
libgcc_s.so.1(GCC_3.3.1) -
libm.so.6 -
libm.so.6(GLIBC_2.0) -
libm.so.6(GLIBC_2.29) -
libstdc++.so.6 -
libstdc++.so.6(CXXABI_1.3) -
libstdc++.so.6(CXXABI_1.3.9) -
libstdc++.so.6(GLIBCXX_3.4) -
libstdc++.so.6(GLIBCXX_3.4.11) -
libstdc++.so.6(GLIBCXX_3.4.21) -
libstdc++.so.6(GLIBCXX_3.4.9) -
rtld(GNU_HASH) -

Provides

Name Value
R-ape = 5.3-1.fc30
R-ape(x86-32) = 5.3-1.fc30

Download

Type URL
Mirror download-ib01.fedoraproject.org
Binary Package R-ape-5.3-1.fc30.i686.rpm
Source Package R-ape-5.3-1.fc30.src.rpm

Install Howto

Install R-ape rpm package:

# dnf --enablerepo=updates-testing install R-ape

Files

Path
/usr/lib/.build-id/
/usr/lib/.build-id/52/5afc785a5a16bdc0ec10a39922c37727af66da
/usr/lib/R/library/ape/CITATION
/usr/lib/R/library/ape/DESCRIPTION
/usr/lib/R/library/ape/INDEX
/usr/lib/R/library/ape/NAMESPACE
/usr/lib/R/library/ape/NEWS
/usr/lib/R/library/ape/Meta/Rd.rds
/usr/lib/R/library/ape/Meta/data.rds
/usr/lib/R/library/ape/Meta/features.rds
/usr/lib/R/library/ape/Meta/hsearch.rds
/usr/lib/R/library/ape/Meta/links.rds
/usr/lib/R/library/ape/Meta/nsInfo.rds
/usr/lib/R/library/ape/Meta/package.rds
/usr/lib/R/library/ape/Meta/vignette.rds
/usr/lib/R/library/ape/R/ape
/usr/lib/R/library/ape/R/ape.rdb
/usr/lib/R/library/ape/R/ape.rdx
/usr/lib/R/library/ape/data/HP.links.rda
/usr/lib/R/library/ape/data/bird.families.rda
/usr/lib/R/library/ape/data/bird.orders.rda
/usr/lib/R/library/ape/data/carnivora.csv.gz
/usr/lib/R/library/ape/data/chiroptera.rda
/usr/lib/R/library/ape/data/cynipids.rda
/usr/lib/R/library/ape/data/gopher.D.rda
/usr/lib/R/library/ape/data/hivtree.newick.rda
/usr/lib/R/library/ape/data/hivtree.table.txt.gz
/usr/lib/R/library/ape/data/lice.D.rda
/usr/lib/R/library/ape/data/lmorigin.ex1.rda
/usr/lib/R/library/ape/data/lmorigin.ex2.rda
/usr/lib/R/library/ape/data/mat3.RData
/usr/lib/R/library/ape/data/mat5M3ID.RData
/usr/lib/R/library/ape/data/mat5Mrand.RData
/usr/lib/R/library/ape/data/woodmouse.rda
/usr/lib/R/library/ape/doc/MoranI.R
/usr/lib/R/library/ape/doc/MoranI.Rnw
/usr/lib/R/library/ape/doc/MoranI.pdf
/usr/lib/R/library/ape/doc/index.html
/usr/lib/R/library/ape/help/AnIndex
/usr/lib/R/library/ape/help/aliases.rds
/usr/lib/R/library/ape/help/ape.rdb
/usr/lib/R/library/ape/help/ape.rdx
/usr/lib/R/library/ape/help/paths.rds
/usr/lib/R/library/ape/html/00Index.html
/usr/lib/R/library/ape/html/AAbin.html
/usr/lib/R/library/ape/html/CADM.global.html
/usr/lib/R/library/ape/html/DNAbin.html
/usr/lib/R/library/ape/html/DNAbin2indel.html
/usr/lib/R/library/ape/html/Initialize.corPhyl.html
/usr/lib/R/library/ape/html/LTT.html
/usr/lib/R/library/ape/html/MPR.html
/usr/lib/R/library/ape/html/MoranI.html
/usr/lib/R/library/ape/html/R.css
/usr/lib/R/library/ape/html/SDM.html
/usr/lib/R/library/ape/html/ace.html
/usr/lib/R/library/ape/html/add.scale.bar.html
/usr/lib/R/library/ape/html/additive.html
/usr/lib/R/library/ape/html/alex.html
/usr/lib/R/library/ape/html/all.equal.DNAbin.html
/usr/lib/R/library/ape/html/all.equal.phylo.html
/usr/lib/R/library/ape/html/alview.html
/usr/lib/R/library/ape/html/ape-internal.html
/usr/lib/R/library/ape/html/ape-package.html
/usr/lib/R/library/ape/html/apetools.html
/usr/lib/R/library/ape/html/as.alignment.html
/usr/lib/R/library/ape/html/as.bitsplits.html
/usr/lib/R/library/ape/html/as.matching.html
/usr/lib/R/library/ape/html/as.phylo.formula.html
/usr/lib/R/library/ape/html/as.phylo.html
/usr/lib/R/library/ape/html/axisPhylo.html
/usr/lib/R/library/ape/html/balance.html
/usr/lib/R/library/ape/html/base.freq.html
/usr/lib/R/library/ape/html/bd.ext.html
/usr/lib/R/library/ape/html/bd.time.html
/usr/lib/R/library/ape/html/binaryPGLMM.html
/usr/lib/R/library/ape/html/bind.tree.html
/usr/lib/R/library/ape/html/bionj.html
/usr/lib/R/library/ape/html/bird.families.html
/usr/lib/R/library/ape/html/bird.orders.html
/usr/lib/R/library/ape/html/birthdeath.html
/usr/lib/R/library/ape/html/boot.phylo.html
/usr/lib/R/library/ape/html/branching.times.html
/usr/lib/R/library/ape/html/c.phylo.html
/usr/lib/R/library/ape/html/carnivora.html
/usr/lib/R/library/ape/html/checkAlignment.html
/usr/lib/R/library/ape/html/checkLabel.html
/usr/lib/R/library/ape/html/checkValidPhylo.html
/usr/lib/R/library/ape/html/cherry.html
/usr/lib/R/library/ape/html/chiroptera.html
/usr/lib/R/library/ape/html/chronoMPL.html
/usr/lib/R/library/ape/html/chronopl.html
/usr/lib/R/library/ape/html/chronos.html
/usr/lib/R/library/ape/html/clustal.html
/usr/lib/R/library/ape/html/coalescent.intervals.html
/usr/lib/R/library/ape/html/collapse.singles.html
/usr/lib/R/library/ape/html/collapsed.intervals.html
/usr/lib/R/library/ape/html/compar.cheverud.html
/usr/lib/R/library/ape/html/compar.gee.html
/usr/lib/R/library/ape/html/compar.lynch.html
/usr/lib/R/library/ape/html/compar.ou.html
/usr/lib/R/library/ape/html/comparePhylo.html
/usr/lib/R/library/ape/html/compute.brlen.html
/usr/lib/R/library/ape/html/compute.brtime.html
/usr/lib/R/library/ape/html/consensus.html
/usr/lib/R/library/ape/html/cophenetic.phylo.html
/usr/lib/R/library/ape/html/cophyloplot.html
/usr/lib/R/library/ape/html/corBlomberg.html
/usr/lib/R/library/ape/html/corBrownian.html
/usr/lib/R/library/ape/html/corClasses.html
/usr/lib/R/library/ape/html/corGrafen.html
/usr/lib/R/library/ape/html/corMartins.html
/usr/lib/R/library/ape/html/corPagel.html
/usr/lib/R/library/ape/html/corphylo.html
/usr/lib/R/library/ape/html/correlogram.formula.html
/usr/lib/R/library/ape/html/cynipids.html
/usr/lib/R/library/ape/html/dbd.html
/usr/lib/R/library/ape/html/def.html
/usr/lib/R/library/ape/html/del.gaps.html
/usr/lib/R/library/ape/html/delta.plot.html
/usr/lib/R/library/ape/html/dist.dna.html
/usr/lib/R/library/ape/html/dist.gene.html
/usr/lib/R/library/ape/html/dist.topo.html
/usr/lib/R/library/ape/html/diversi.gof.html
/usr/lib/R/library/ape/html/diversi.time.html
/usr/lib/R/library/ape/html/diversity.contrast.test.html
/usr/lib/R/library/ape/html/dnds.html
/usr/lib/R/library/ape/html/drop.tip.html
/usr/lib/R/library/ape/html/edges.html
/usr/lib/R/library/ape/html/evonet.html
/usr/lib/R/library/ape/html/ewLasso.html
/usr/lib/R/library/ape/html/fastme.html
/usr/lib/R/library/ape/html/gammaStat.html
/usr/lib/R/library/ape/html/hivtree.html
/usr/lib/R/library/ape/html/howmanytrees.html
/usr/lib/R/library/ape/html/identify.phylo.html
/usr/lib/R/library/ape/html/image.DNAbin.html
/usr/lib/R/library/ape/html/is.binary.tree.html
/usr/lib/R/library/ape/html/is.compatible.html
/usr/lib/R/library/ape/html/is.monophyletic.html
/usr/lib/R/library/ape/html/is.ultrametric.html
/usr/lib/R/library/ape/html/kronoviz.html
/usr/lib/R/library/ape/html/label2table.html
/usr/lib/R/library/ape/html/ladderize.html
/usr/lib/R/library/ape/html/lmorigin.html
/usr/lib/R/library/ape/html/ltt.plot.html
/usr/lib/R/library/ape/html/makeLabel.html
/usr/lib/R/library/ape/html/makeNodeLabel.html
/usr/lib/R/library/ape/html/mantel.test.html
/usr/lib/R/library/ape/html/mat3.html
/usr/lib/R/library/ape/html/mat5M3ID.html
/usr/lib/R/library/ape/html/mat5Mrand.html
/usr/lib/R/library/ape/html/matexpo.html
/usr/lib/R/library/ape/html/mcconwaysims.test.html
/usr/lib/R/library/ape/html/mcmc.popsize.html
/usr/lib/R/library/ape/html/mixedFontLabel.html
/usr/lib/R/library/ape/html/mrca.html
/usr/lib/R/library/ape/html/mst.html
/usr/lib/R/library/ape/html/multi2di.html
/usr/lib/R/library/ape/html/multiphylo.html
/usr/lib/R/library/ape/html/mvr.html
/usr/lib/R/library/ape/html/nj.html
/usr/lib/R/library/ape/html/njs.html
/usr/lib/R/library/ape/html/node.dating.html
/usr/lib/R/library/ape/html/node.depth.html
/usr/lib/R/library/ape/html/nodelabels.html
/usr/lib/R/library/ape/html/nodepath.html
/usr/lib/R/library/ape/html/parafit.html
/usr/lib/R/library/ape/html/pcoa.html
/usr/lib/R/library/ape/html/phydataplot.html
/usr/lib/R/library/ape/html/phymltest.html
/usr/lib/R/library/ape/html/pic.html
/usr/lib/R/library/ape/html/pic.ortho.html
/usr/lib/R/library/ape/html/plot.correlogram.html
/usr/lib/R/library/ape/html/plot.phylo.html
/usr/lib/R/library/ape/html/plot.phyloExtra.html
/usr/lib/R/library/ape/html/plot.varcomp.html
/usr/lib/R/library/ape/html/plotTreeTime.html
/usr/lib/R/library/ape/html/print.phylo.html
/usr/lib/R/library/ape/html/rDNAbin.html
/usr/lib/R/library/ape/html/rTraitCont.html
/usr/lib/R/library/ape/html/rTraitDisc.html
/usr/lib/R/library/ape/html/rTraitMult.html
/usr/lib/R/library/ape/html/read.GenBank.html
/usr/lib/R/library/ape/html/read.caic.html
/usr/lib/R/library/ape/html/read.dna.html
/usr/lib/R/library/ape/html/read.gff.html
/usr/lib/R/library/ape/html/read.nexus.data.html
/usr/lib/R/library/ape/html/read.nexus.html
/usr/lib/R/library/ape/html/read.tree.html
/usr/lib/R/library/ape/html/reconstruct.html
/usr/lib/R/library/ape/html/reorder.phylo.html
/usr/lib/R/library/ape/html/richness.yule.test.html
/usr/lib/R/library/ape/html/rlineage.html
/usr/lib/R/library/ape/html/root.html
/usr/lib/R/library/ape/html/rotate.html
/usr/lib/R/library/ape/html/rtree.html
/usr/lib/R/library/ape/html/rtt.html
/usr/lib/R/library/ape/html/seg.sites.html
/usr/lib/R/library/ape/html/skyline.html
/usr/lib/R/library/ape/html/skylineplot.html
/usr/lib/R/library/ape/html/slowinskiguyer.test.html
/usr/lib/R/library/ape/html/speciesTree.html
/usr/lib/R/library/ape/html/stree.html
/usr/lib/R/library/ape/html/subtreeplot.html
/usr/lib/R/library/ape/html/subtrees.html
/usr/lib/R/library/ape/html/summary.phylo.html
/usr/lib/R/library/ape/html/trans.html
/usr/lib/R/library/ape/html/treePop.html
/usr/lib/R/library/ape/html/trex.html
/usr/lib/R/library/ape/html/triangMtd.html
/usr/lib/R/library/ape/html/unique.multiPhylo.html
/usr/lib/R/library/ape/html/updateLabel.html
/usr/lib/R/library/ape/html/varCompPhylip.html
/usr/lib/R/library/ape/html/varcomp.html
/usr/lib/R/library/ape/html/vcv.phylo.html
/usr/lib/R/library/ape/html/vcv2phylo.html
/usr/lib/R/library/ape/html/weight.taxo.html
/usr/lib/R/library/ape/html/where.html
/usr/lib/R/library/ape/html/which.edge.html
/usr/lib/R/library/ape/html/woodmouse.html
/usr/lib/R/library/ape/html/write.dna.html
/usr/lib/R/library/ape/html/write.nexus.data.html
/usr/lib/R/library/ape/html/write.nexus.html
/usr/lib/R/library/ape/html/write.tree.html
/usr/lib/R/library/ape/html/yule.cov.html
/usr/lib/R/library/ape/html/yule.html
/usr/lib/R/library/ape/html/yule.time.html
/usr/lib/R/library/ape/html/zoom.html
/usr/lib/R/library/ape/libs/ape.so

Changelog

2019-03-17 - Elliott Sales de Andrade <quantum.analyst@gmail.com> - 5.3-1
- Update to latest version
2019-01-31 - Fedora Release Engineering <releng@fedoraproject.org> - 5.2-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_30_Mass_Rebuild
2019-01-22 - Elliott Sales de Andrade <quantum.analyst@gmail.com> - 5.2-1
- Update to latest version
- Re-enable build checks
- Re-arrange to match latest template
2018-07-12 - Fedora Release Engineering <releng@fedoraproject.org> - 5.1-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_29_Mass_Rebuild
2018-05-16 - Tom Callaway <spot@fedoraproject.org> - 5.1-1
- update to 5.1, rebuild for R 3.5.0
2018-03-23 - Elliott Sales de Andrade <quantum.analyst@gmail.com> - 5.0-1
- initial package for Fedora

See Also

Package Description
R-assertthat-0.2.1-1.fc30.noarch.rpm Easy Pre and Post Assertions
R-cli-1.1.0-1.fc30.noarch.rpm Helpers for Developing Command Line Interfaces
R-colorspace-1.4.1-1.fc30.i686.rpm A Toolbox for Manipulating and Assessing Colors and Palettes
R-diffobj-0.2.2-1.fc30.i686.rpm Diffs for R Objects
R-dtplyr-0.0.3-1.fc30.noarch.rpm Data Table Back-End for 'dplyr'
R-forcats-0.4.0-1.fc30.noarch.rpm Tools for Working with Categorical Variables (Factors)
R-fs-1.2.7-1.fc30.i686.rpm Cross-Platform File System Operations Based on 'libuv'
R-gapminder-0.3.0-1.fc30.noarch.rpm Data from Gapminder
R-gdtools-0.1.8-1.fc30.i686.rpm Utilities for Graphical Rendering
R-gdtools-devel-0.1.8-1.fc30.i686.rpm Development files for R-gdtools
R-ggplot2movies-0.0.1-1.fc30.noarch.rpm Movies Data
R-glue-1.3.1-1.fc30.i686.rpm Interpreted String Literals
R-gmp-0.5.13.5-1.fc30.i686.rpm Multiple Precision Arithmetic
R-gsl-2.1.6-1.fc30.i686.rpm Wrapper for the Gnu Scientific Library
R-highr-0.8-1.fc30.noarch.rpm Syntax Highlighting for R Source Code
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