Ray-extra-2.3.1-12.fc24.x86_64.rpm


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Description

Ray-extra - Scripts and XSL sheets for post-processing

Distribution: Fedora Rawhide
Repository: Fedora x86_64
Package name: Ray-extra
Package version: 2.3.1
Package release: 12.fc24
Package architecture: x86_64
Package type: rpm
Installed size: 39.92 KB
Download size: 24.06 KB
Official Mirror: dl.fedoraproject.org
Ray is a parallel software that computes de novo genome assemblies with next-generation sequencing data. Ray is written in C++ and can run in parallel on numerous interconnected computers using the message-passing interface (MPI) standard. This sub-package contains scripts and XSL sheets for post-processing.

Alternatives

Requires

Provides

  • Ray-extra = 2.3.1-12.fc24
  • Ray-extra(x86-64) = 2.3.1-12.fc24

    Download

    Install Howto

    Install the Ray-extra rpm package:

    # dnf install Ray-extra

    Files

    • /usr/share/Ray/
    • /usr/share/Ray/scripts/Build-Link-Time-Optimization.sh
    • /usr/share/Ray/scripts/GenerateRayCommand.sh
    • /usr/share/Ray/scripts/ShipProduct.sh
    • /usr/share/Ray/scripts/dump-ChangeLog.sh
    • /usr/share/Ray/scripts/getSeq.py
    • /usr/share/Ray/scripts/illumina-split-linked-sequences-fastq.py
    • /usr/share/Ray/scripts/interleave-fasta.py
    • /usr/share/Ray/scripts/interleave-fastq.py
    • /usr/share/Ray/scripts/plot-color-distributions.R
    • /usr/share/Ray/scripts/plot-coverage-distribution.R
    • /usr/share/Ray/scripts/plot-library-distribution.R
    • /usr/share/Ray/scripts/NCBI-Taxonomy/Create-Taxon-Names.py
    • /usr/share/Ray/scripts/NCBI-Taxonomy/CreateRayInputStructures.sh
    • /usr/share/Ray/scripts/NCBI-Taxonomy/GenerateTaxonNames.py
    • /usr/share/Ray/scripts/NCBI-Taxonomy/README
    • /usr/share/Ray/scripts/NCBI-Taxonomy/generateTrees.sh
    • /usr/share/Ray/scripts/NCBI-Taxonomy/getName.py
    • /usr/share/Ray/scripts/NCBI-Taxonomy/getNameInFile.py
    • /usr/share/Ray/scripts/xsl-xml/SequenceAbundances-assembled.xsl
    • /usr/share/Ray/scripts/xsl-xml/SequenceAbundances-to-html-tables.xsl
    • /usr/share/Ray/scripts/xsl-xml/SequenceAbundances-to-html.xsl
    • /usr/share/Ray/scripts/xsl-xml/SequenceAbundances-to-tsv.xsl
    • /usr/share/Ray/scripts/xsl-xml/Taxons-to-html-tables.xsl
    • /usr/share/Ray/scripts/xsl-xml/Taxons-to-html.xsl
    • /usr/share/Ray/scripts/xsl-xml/Taxons-to-tsv-any-rank.xsl
    • /usr/share/Ray/scripts/xsl-xml/Taxons-to-tsv-class.xsl
    • /usr/share/Ray/scripts/xsl-xml/Taxons-to-tsv-family.xsl
    • /usr/share/Ray/scripts/xsl-xml/Taxons-to-tsv-genus.xsl
    • /usr/share/Ray/scripts/xsl-xml/Taxons-to-tsv-order.xsl
    • /usr/share/Ray/scripts/xsl-xml/Taxons-to-tsv-phylum.xsl
    • /usr/share/Ray/scripts/xsl-xml/Taxons-to-tsv-species.xsl
    • /usr/share/Ray/scripts/xsl-xml/Terms-to-tsv.xsl

    Changelog

    2015-09-15 - Orion Poplawski <orion@cora.nwra.com> - 2.3.1-12 - Rebuild for openmpi 1.10.0

    2015-08-15 - Zbigniew Jędrzejewski-Szmek <zbyszek@in.waw.pl> - 2.3.1-11 - Rebuild for MPI provides

    2015-07-26 - Sandro Mani <manisandro@gmail.com> - 2.3.1-10 - Rebuild for RPM MPI Requires Provides Change

    2015-06-16 - Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.3.1-9 - Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild

    2015-05-02 - Kalev Lember <kalevlember@gmail.com> - 2.3.1-8 - Rebuilt for GCC 5 C++11 ABI change

    2015-03-16 - Sebastien Boisvert <boisvert@anl.gov> - 2.3.1-7 - fix linking issue in rawhide

    2014-11-05 - Tuomo Soini <tis@foobar.fi> - 2.3.1-6 - Ray-mpich2 got obsoleted by rhel 6.6 update

    2014-08-15 - Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.3.1-5 - Rebuilt for https://fedoraproject.org/wiki/Fedora_21_22_Mass_Rebuild

    2014-06-06 - Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.3.1-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_21_Mass_Rebuild

    2014-03-02 - Sébastien Boisvert <sebastien.boisvert.3@ulaval.ca> - 2.3.1-3 - use correct macro name to load/unload mpich2

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