bionetgen-perl-2.5.0-5.fc32.noarch.rpm


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Description

bionetgen-perl - Perl scripts and Models used by bionetgen

Property Value
Distribution Fedora Rawhide
Repository Fedora x86_64
Package filename bionetgen-perl-2.5.0-5.fc32.noarch.rpm
Package name bionetgen-perl
Package version 2.5.0
Package release 5.fc32
Package architecture noarch
Package type rpm
Homepage https://github.com/RuleWorld/bionetgen
License GPLv3
Maintainer -
Download size 648.53 KB
Installed size 3.03 MB
Perl scripts and Models used by bionetgen.

Alternatives

Package Version Architecture Repository
bionetgen-perl - - -

Requires

Name Value
/usr/bin/perl -
bionetgen = 2.5.0-5.fc32
perl(:MODULE_COMPAT_5.30.0) -
perl(Carp) -
perl(Class::Struct) -
perl(Config) -
perl(Cwd) -
perl(Data::Dumper) -
perl(Exporter) -
perl(File::Basename) -
perl(File::Path) -
perl(File::Spec) -
perl(File::Spec::Win32) -
perl(FindBin) -
perl(Getopt::Long) -
perl(IO::Handle) -
perl(IO::Select) -
perl(IPC::Open3) -
perl(List::Util) -
perl(Math::Trig) -
perl(POSIX) -
perl(Scalar::Util) -
perl(Storable) -
perl(Symbol) -
perl(constant) -
perl(lib) -
perl(strict) -
perl(vars) -
perl(warnings) -

Provides

Name Value
bionetgen-perl = 2.5.0-5.fc32
perl(Viz) -

Download

Type URL
Mirror download-ib01.fedoraproject.org
Binary Package bionetgen-perl-2.5.0-5.fc32.noarch.rpm
Source Package bionetgen-2.5.0-5.fc32.src.rpm

Install Howto

Install bionetgen-perl rpm package:

# dnf install bionetgen-perl

Files

Path
/usr/share/perl5/vendor_perl/BioNetGen/BNG2.pl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/BIOMD0000000010.xml
/usr/share/perl5/vendor_perl/BioNetGen/Models2/ButcherTableau.txt
/usr/share/perl5/vendor_perl/BioNetGen/Models2/CaOscillate_Func.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/CaOscillate_Sat.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/Haugh2b.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/LV.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/Motivating_example.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/Motivating_example_cBNGL.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/Repressilator.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/SHP2_base_model.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/blbr.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/catalysis.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/egfr_net.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/egfr_net_red.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/egfr_path.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/energy_example1.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/fceri_ji.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/gene_expr_func.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/localfunc.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/nfkb.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/nfkb_illustrating_protocols.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/parameter_scan_with_protocol.ipynb
/usr/share/perl5/vendor_perl/BioNetGen/Models2/partial_dynamical_scaling.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/run_all.pl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/simargs.txt
/usr/share/perl5/vendor_perl/BioNetGen/Models2/simple_nfsim.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/simple_sbml_import.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/test_continue.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/test_fixed.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/tlbr.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/toy-jim.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/visualize.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/visualize_opts1.txt
/usr/share/perl5/vendor_perl/BioNetGen/Models2/visualize_opts2.txt
/usr/share/perl5/vendor_perl/BioNetGen/Models2/FceriModels/MODELS.txt
/usr/share/perl5/vendor_perl/BioNetGen/Models2/FceriModels/fceri_fyn.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/FceriModels/fceri_fyn.net
/usr/share/perl5/vendor_perl/BioNetGen/Models2/FceriModels/fceri_fyn_lig.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/FceriModels/fceri_fyn_trimer.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/FceriModels/fceri_gamma2.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/FceriModels/fceri_gamma2_asym.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/FceriModels/fceri_ji.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/FceriModels/fceri_ji_red.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/FceriModels/fceri_lyn_745.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/FceriModels/fceri_trimer.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/MCell/README.pdf
/usr/share/perl5/vendor_perl/BioNetGen/Models2/MCell/default.geometry.mdl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/MCell/fceri_ji.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/MCell/fceri_ji_comp.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/MCell/fceri_ji_comp.geometry.mdl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/MCell/rec_dim.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/MCell/rec_dim_comp.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/MCell/rec_dim_comp.geometry.mdl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/nfkb_illustrating_protocols_R/nfkb_illustrating_protocols_R_00001.cdat
/usr/share/perl5/vendor_perl/BioNetGen/Models2/nfkb_illustrating_protocols_R/nfkb_illustrating_protocols_R_00001.gdat
/usr/share/perl5/vendor_perl/BioNetGen/Models2/nfkb_illustrating_protocols_R/nfkb_illustrating_protocols_R_00001.net
/usr/share/perl5/vendor_perl/BioNetGen/Models2/nfkb_illustrating_protocols_R/nfkb_illustrating_protocols_R_00002.cdat
/usr/share/perl5/vendor_perl/BioNetGen/Models2/nfkb_illustrating_protocols_R/nfkb_illustrating_protocols_R_00002.gdat
/usr/share/perl5/vendor_perl/BioNetGen/Models2/nfkb_illustrating_protocols_R/nfkb_illustrating_protocols_R_00002.net
/usr/share/perl5/vendor_perl/BioNetGen/Models2/nfkb_illustrating_protocols_R/nfkb_illustrating_protocols_R_00003.cdat
/usr/share/perl5/vendor_perl/BioNetGen/Models2/nfkb_illustrating_protocols_R/nfkb_illustrating_protocols_R_00003.gdat
/usr/share/perl5/vendor_perl/BioNetGen/Models2/nfkb_illustrating_protocols_R/nfkb_illustrating_protocols_R_00003.net
/usr/share/perl5/vendor_perl/BioNetGen/Models2/nfkb_illustrating_protocols_R/nfkb_illustrating_protocols_R_00004.cdat
/usr/share/perl5/vendor_perl/BioNetGen/Models2/nfkb_illustrating_protocols_R/nfkb_illustrating_protocols_R_00004.gdat
/usr/share/perl5/vendor_perl/BioNetGen/Models2/nfkb_illustrating_protocols_R/nfkb_illustrating_protocols_R_00004.net
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/BNGAction.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/BNGMessages.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/BNGModel.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/BNGOptions.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/BNGOutput.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/BNGUtils.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Cache.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/CartesianProduct.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Compartment.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/CompartmentList.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Component.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/ComponentType.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Console.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/EnergyPattern.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Expression.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Function.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/HNauty.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/MacroBNG2.pl
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/MacroBNGModel.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Map.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/ModelWrapper.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Molecule.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/MoleculeType.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/MoleculeTypesList.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Observable.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Param.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/ParamList.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Population.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/PopulationList.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/RateLaw.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/RefineRule.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Rxn.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/RxnList.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/RxnRule.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/SBMLMultiAux.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Species.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/SpeciesGraph.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/SpeciesList.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/XMLReader.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/auto_hpp.pl
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/diff_net.pl
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/sample_vars_2.pl
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/scan_var.pl
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/test_cartesianproduct.pl
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/verify.pl
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Aux2/MakeBin.pl
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Aux2/bnglstat.pl
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Aux2/count_blocks.pl
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Aux2/count_lines.pl
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Aux2/countdown.pl
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Aux2/diff_cdat.pl
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Aux2/express.pl
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Aux2/express_main.pl
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Aux2/group_size.pl
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Aux2/runBNG.pl
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Aux2/test.pl
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Aux2/test_compartment.pl
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Aux2/test_molorder.pl
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Aux2/test_redirect.pl
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Aux2/test_sub.pl
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Boolean2BNGL/ABC_example.txt
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Boolean2BNGL/Boolean2BNGL.pl
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Boolean2BNGL/Tcell_model_Nov2013_LAH.txt
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Boolean2BNGL/Tcell_model_Oct2013.txt
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Boolean2BNGL/Tcell_model_v16.txt
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Visualization/ContactMap.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Visualization/GML.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Visualization/NetworkGraph.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Visualization/ProcessGraph.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Visualization/README
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Visualization/RINF.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Visualization/StructureGraph.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Visualization/VisOptParse.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Visualization/Viz.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Visualization/analyze.pl
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Visualization/readGML.pl
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Visualization/visualize.pl
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/XML/TreePP.pm

Changelog

2019-07-24 - Fedora Release Engineering <releng@fedoraproject.org> - 2.5.0-5
- Rebuilt for https://fedoraproject.org/wiki/Fedora_31_Mass_Rebuild
2019-07-01 - Antonio Trande <sagitterATfedoraproject.org> - 2.5.0-4
- Use devtoolset-8 on EPEL 7
2019-07-01 - Antonio Trande <sagitterATfedoraproject.org> - 2.5.0-3
- Rebuild for sundials
2019-05-30 - Jitka Plesnikova <jplesnik@redhat.com> - 2.5.0-2
- Perl 5.30 rebuild
2019-05-07 - Antonio Trande <sagitterATfedoraproject.org> - 2.5.0-1
- Release 2.5.0
2019-04-20 - Antonio Trande <sagitterATfedoraproject.org> - 2.4.0-5
- Ready for MPI (disabled)
- Bundle Sundials
2019-02-13 - Orion Poplawski <orion@cora.nwra.com> - 2.4.0-4
- Rebuild for openmpi 3.1.3
2019-01-31 - Fedora Release Engineering <releng@fedoraproject.org> - 2.4.0-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_30_Mass_Rebuild
2018-11-09 - Antonio Trande <sagitterATfedoraproject.org> - 2.4.0-2
- Filtering of SBMLMultiAux module
2018-11-08 - Antonio Trande <sagitterATfedoraproject.org> - 2.4.0-1
- Release 2.4.0
- Drop obsolete patch
- Rebuild on epel7 (rhbz#1647989)

See Also

Package Description
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biosig4c++-devel-1.9.5-1.gita2aae2b.fc32.i686.rpm A software library for processing of biomedical signals
biosig4c++-devel-1.9.5-1.gita2aae2b.fc32.x86_64.rpm A software library for processing of biomedical signals
bip-0.9.0-0.4.20181225gitc9cc64f.fc31.x86_64.rpm IRC Bouncer
bird-2.0.7-1.fc32.x86_64.rpm BIRD Internet Routing Daemon
bird-doc-2.0.7-1.fc32.noarch.rpm Documentation for BIRD Internet Routing Daemon
bison-3.4.1-2.fc31.x86_64.rpm A GNU general-purpose parser generator
bison-devel-3.4.1-2.fc31.i686.rpm -ly library for development using Bison-generated parsers
bison-devel-3.4.1-2.fc31.x86_64.rpm -ly library for development using Bison-generated parsers
bison-runtime-3.4.1-2.fc31.x86_64.rpm Runtime support files used by Bison-generated parsers
bitlbee-3.5.2-0.3.20180919git0b1448f.fc31.i686.rpm IRC to other chat networks gateway
bitlbee-3.5.2-0.3.20180919git0b1448f.fc31.x86_64.rpm IRC to other chat networks gateway
bitlbee-devel-3.5.2-0.3.20180919git0b1448f.fc31.i686.rpm Development files for bitlbee
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